1pp7
From Proteopedia
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| - | [[Image:1pp7.gif|left|200px]] | + | [[Image:1pp7.gif|left|200px]] |
| - | + | ||
| - | '''Crystal structure of the T. vaginalis Initiator binding protein bound to the ferredoxin Inr''' | + | {{Structure |
| + | |PDB= 1pp7 |SIZE=350|CAPTION= <scene name='initialview01'>1pp7</scene>, resolution 2.45Å | ||
| + | |SITE= | ||
| + | |LIGAND= <scene name='pdbligand=ZN:ZINC ION'>ZN</scene> | ||
| + | |ACTIVITY= | ||
| + | |GENE= Trichomonas vaginalis:IBP39 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=5722 Trichomonas vaginalis]) | ||
| + | }} | ||
| + | |||
| + | '''Crystal structure of the T. vaginalis Initiator binding protein bound to the ferredoxin Inr''' | ||
| + | |||
==Overview== | ==Overview== | ||
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==About this Structure== | ==About this Structure== | ||
| - | 1PP7 is a [ | + | 1PP7 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Trichomonas_vaginalis Trichomonas vaginalis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PP7 OCA]. |
==Reference== | ==Reference== | ||
| - | Structural basis of core promoter recognition in a primitive eukaryote., Schumacher MA, Lau AO, Johnson PJ, Cell. 2003 Nov 14;115(4):413-24. PMID:[http:// | + | Structural basis of core promoter recognition in a primitive eukaryote., Schumacher MA, Lau AO, Johnson PJ, Cell. 2003 Nov 14;115(4):413-24. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/14622596 14622596] |
[[Category: Single protein]] | [[Category: Single protein]] | ||
[[Category: Trichomonas vaginalis]] | [[Category: Trichomonas vaginalis]] | ||
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[[Category: ibp39]] | [[Category: ibp39]] | ||
[[Category: initiator]] | [[Category: initiator]] | ||
| - | [[Category: t. | + | [[Category: t. vaginali]] |
[[Category: transcription initation]] | [[Category: transcription initation]] | ||
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 13:27:13 2008'' |
Revision as of 11:27, 20 March 2008
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| , resolution 2.45Å | |||||||
|---|---|---|---|---|---|---|---|
| Ligands: | |||||||
| Gene: | Trichomonas vaginalis:IBP39 (Trichomonas vaginalis) | ||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
Crystal structure of the T. vaginalis Initiator binding protein bound to the ferredoxin Inr
Overview
Transcription start site selection in eukaryotes is mediated through combinations of the TATA, initiator (Inr), and downstream promoter elements (DPE). In Trichomonas vaginalis, a parabasalian flagellate thought to represent an ancient eukaryote lineage, the Inr appears to be solely responsible for start site selection and is recognized by the initiator binding protein 39 kDa (IBP39). IBP39 contains an N-terminal Inr binding domain (IBD) connected via a flexible linker to a C-terminal domain (C domain). Here we present crystal structures of the apoIBD and IBD-Inr complexes and the C domain. The IBD structures reveal a winged-helix motif with prokaryotic and eukaryotic features and a scaffold similar to that of ETS-family proteins. The C domain structure and biochemical studies indicate that it interacts with the T. vaginalis RNAP II large subunit C-terminal domain. These data suggest that binding of IBP39 to the Inr directly recruits RNAP II and in this way initiates transcription.
About this Structure
1PP7 is a Single protein structure of sequence from Trichomonas vaginalis. Full crystallographic information is available from OCA.
Reference
Structural basis of core promoter recognition in a primitive eukaryote., Schumacher MA, Lau AO, Johnson PJ, Cell. 2003 Nov 14;115(4):413-24. PMID:14622596
Page seeded by OCA on Thu Mar 20 13:27:13 2008
