This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
4pbu
From Proteopedia
| Line 3: | Line 3: | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[4pbu]] is a 38 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermosynechococcus_elongatus Thermosynechococcus elongatus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4PBU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4PBU FirstGlance]. <br> | <table><tr><td colspan='2'>[[4pbu]] is a 38 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermosynechococcus_elongatus Thermosynechococcus elongatus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4PBU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4PBU FirstGlance]. <br> | ||
| - | </td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BCR:BETA-CAROTENE'>BCR</scene>, <scene name='pdbligand=BCT:BICARBONATE+ION'>BCT</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=CLA:CHLOROPHYLL+A'>CLA</scene>, <scene name='pdbligand=DGD:DIGALACTOSYL+DIACYL+GLYCEROL+(DGDG)'>DGD</scene>, <scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=LHG:1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE'>LHG</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=OEX:CA-MN4-O5+CLUSTER'>OEX</scene>, <scene name='pdbligand=PHO:PHEOPHYTIN+A'>PHO</scene>, <scene name='pdbligand=PL9:2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE'>PL9</scene>, <scene name='pdbligand=SQD:1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL'>SQD</scene>< | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BCR:BETA-CAROTENE'>BCR</scene>, <scene name='pdbligand=BCT:BICARBONATE+ION'>BCT</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=CLA:CHLOROPHYLL+A'>CLA</scene>, <scene name='pdbligand=DGD:DIGALACTOSYL+DIACYL+GLYCEROL+(DGDG)'>DGD</scene>, <scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=LHG:1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE'>LHG</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=OEX:CA-MN4-O5+CLUSTER'>OEX</scene>, <scene name='pdbligand=PHO:PHEOPHYTIN+A'>PHO</scene>, <scene name='pdbligand=PL9:2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE'>PL9</scene>, <scene name='pdbligand=SQD:1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL'>SQD</scene></td></tr> |
| - | <tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Photosystem_II Photosystem II], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.10.3.9 1.10.3.9] </span></td></tr> | + | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Photosystem_II Photosystem II], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.10.3.9 1.10.3.9] </span></td></tr> |
| - | <tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4pbu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4pbu OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4pbu RCSB], [http://www.ebi.ac.uk/pdbsum/4pbu PDBsum]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4pbu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4pbu OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4pbu RCSB], [http://www.ebi.ac.uk/pdbsum/4pbu PDBsum]</span></td></tr> |
| - | <table> | + | </table> |
| + | == Function == | ||
| + | [[http://www.uniprot.org/uniprot/PSBF_THEEB PSBF_THEEB]] This b-type cytochrome is tightly associated with the reaction center of photosystem II and possibly is part of the water-oxidation complex (By similarity).[HAMAP-Rule:MF_00643] [[http://www.uniprot.org/uniprot/PSBL_THEEB PSBL_THEEB]] Required for PSII activity (By similarity). [[http://www.uniprot.org/uniprot/PSBJ_THEEB PSBJ_THEEB]] This protein is a component of the reaction center of photosystem II (By similarity). [[http://www.uniprot.org/uniprot/YCF12_THEEB YCF12_THEEB]] A core subunit of photosystem II (PSII).[HAMAP-Rule:MF_01329] [[http://www.uniprot.org/uniprot/PSBU_THEEB PSBU_THEEB]] Stabilizes the structure of photosystem II oxygen-evolving complex (OEC), the ion environment of oxygen evolution and protects the OEC against heat-induced inactivation (By similarity).[HAMAP-Rule:MF_00589] [[http://www.uniprot.org/uniprot/PSBT_THEEB PSBT_THEEB]] Seems to play a role in the dimerization of PSII.<ref>PMID:15653799</ref> [[http://www.uniprot.org/uniprot/PSBI_THEEB PSBI_THEEB]] This protein is a component of the reaction center of photosystem II.[HAMAP-Rule:MF_01316] [[http://www.uniprot.org/uniprot/PSBA1_THEEB PSBA1_THEEB]] This is one of the two reaction center proteins of photosystem II. [[http://www.uniprot.org/uniprot/PSBX_THEEB PSBX_THEEB]] Involved in the binding and/or turnover of quinones at the Q(B) site of Photosystem II.<ref>PMID:11230572</ref> [[http://www.uniprot.org/uniprot/PSBZ_THEEB PSBZ_THEEB]] Controls the interaction of photosystem II (PSII) cores with the light-harvesting antenna. May also aid in binding of PsbK, Ycf12 and the oxygen-evolving complex to PSII, at least in vitro.<ref>PMID:17967798</ref> [[http://www.uniprot.org/uniprot/PSBK_THEEB PSBK_THEEB]] This protein is a component of the reaction center of photosystem II.[HAMAP-Rule:MF_00441] [[http://www.uniprot.org/uniprot/PSBO_THEEB PSBO_THEEB]] MSP binds to a putative Mn-binding protein and keeps 2 of the 4 Mn-atoms associated with PSII (By similarity). [[http://www.uniprot.org/uniprot/CY550_THEEB CY550_THEEB]] Low-potential cytochrome c that plays a role in the oxygen-evolving complex of photosystem II. It is not essential for growth under normal conditions but is required under low CO(2) concentrations.[HAMAP-Rule:MF_01378] [[http://www.uniprot.org/uniprot/PSBE_THEEB PSBE_THEEB]] This b-type cytochrome is tightly associated with the reaction center of photosystem II and possibly is part of the water-oxidation complex.[HAMAP-Rule:MF_00642] | ||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
== Publication Abstract from PubMed == | == Publication Abstract from PubMed == | ||
| Line 21: | Line 23: | ||
[[Category: Photosystem II]] | [[Category: Photosystem II]] | ||
[[Category: Thermosynechococcus elongatus]] | [[Category: Thermosynechococcus elongatus]] | ||
| - | [[Category: Aquila, A | + | [[Category: Aquila, A]] |
| - | [[Category: Bari, S | + | [[Category: Bari, S]] |
| - | [[Category: Barty, A | + | [[Category: Barty, A]] |
| - | [[Category: Basu, S | + | [[Category: Basu, S]] |
| - | [[Category: Bergkamp, J J | + | [[Category: Bergkamp, J J]] |
| - | [[Category: Beyerlein, K | + | [[Category: Beyerlein, K]] |
| - | [[Category: Bogan, M J | + | [[Category: Bogan, M J]] |
| - | [[Category: Boutet, S | + | [[Category: Boutet, S]] |
| - | [[Category: Caleman, C | + | [[Category: Caleman, C]] |
| - | [[Category: Chao, T C | + | [[Category: Chao, T C]] |
| - | [[Category: Chapman, H N | + | [[Category: Chapman, H N]] |
| - | [[Category: Cobb, D E | + | [[Category: Cobb, D E]] |
| - | [[Category: Conrad, C E | + | [[Category: Conrad, C E]] |
| - | [[Category: Davis, K M | + | [[Category: Davis, K M]] |
| - | [[Category: Deponte, D | + | [[Category: Deponte, D]] |
| - | [[Category: Doak, R B | + | [[Category: Doak, R B]] |
| - | [[Category: Fleckenstein, H | + | [[Category: Fleckenstein, H]] |
| - | [[Category: Frank, M | + | [[Category: Frank, M]] |
| - | [[Category: Fromme, P | + | [[Category: Fromme, P]] |
| - | [[Category: Fromme, R | + | [[Category: Fromme, R]] |
| - | [[Category: Galli, L | + | [[Category: Galli, L]] |
| - | [[Category: Grotjohann, I | + | [[Category: Grotjohann, I]] |
| - | [[Category: Hau-Riege, S P | + | [[Category: Hau-Riege, S P]] |
| - | [[Category: Hunter, M | + | [[Category: Hunter, M]] |
| - | [[Category: James, D | + | [[Category: James, D]] |
| - | [[Category: Kassemeyer, S | + | [[Category: Kassemeyer, S]] |
| - | [[Category: Kirian, R A | + | [[Category: Kirian, R A]] |
| - | [[Category: Kupitz, C | + | [[Category: Kupitz, C]] |
| - | [[Category: Laksmono, H | + | [[Category: Laksmono, H]] |
| - | [[Category: Liang, M | + | [[Category: Liang, M]] |
| - | [[Category: Liu, H | + | [[Category: Liu, H]] |
| - | [[Category: Lomb, L | + | [[Category: Lomb, L]] |
| - | [[Category: Marchesini, S | + | [[Category: Marchesini, S]] |
| - | [[Category: Martin, A V | + | [[Category: Martin, A V]] |
| - | [[Category: Messerschmidt, M | + | [[Category: Messerschmidt, M]] |
| - | [[Category: Milathianaki, D | + | [[Category: Milathianaki, D]] |
| - | [[Category: Moore, A L | + | [[Category: Moore, A L]] |
| - | [[Category: Moore, T A | + | [[Category: Moore, T A]] |
| - | [[Category: Nass, K | + | [[Category: Nass, K]] |
| - | [[Category: Pushkar, Y | + | [[Category: Pushkar, Y]] |
| - | [[Category: Reeder, B | + | [[Category: Reeder, B]] |
| - | [[Category: Rendek, K N | + | [[Category: Rendek, K N]] |
| - | [[Category: Ros, A | + | [[Category: Ros, A]] |
| - | [[Category: Roy-Chowdhury, S | + | [[Category: Roy-Chowdhury, S]] |
| - | [[Category: Schmidt, K | + | [[Category: Schmidt, K]] |
| - | [[Category: Seibert, M | + | [[Category: Seibert, M]] |
| - | [[Category: Shoeman, R L | + | [[Category: Shoeman, R L]] |
| - | [[Category: Sierra, R G | + | [[Category: Sierra, R G]] |
| - | [[Category: Spence, J C.H | + | [[Category: Spence, J C.H]] |
| - | [[Category: Steinbrener, J | + | [[Category: Steinbrener, J]] |
| - | [[Category: Stellato, F | + | [[Category: Stellato, F]] |
| - | [[Category: Wang, D | + | [[Category: Wang, D]] |
| - | [[Category: Weierstall, U | + | [[Category: Weierstall, U]] |
| - | [[Category: White, T A | + | [[Category: White, T A]] |
| - | [[Category: Williams, G J | + | [[Category: Williams, G J]] |
| - | [[Category: Yan, L | + | [[Category: Yan, L]] |
| - | [[Category: Yang, J H | + | [[Category: Yang, J H]] |
| - | [[Category: Yoon, C | + | [[Category: Yoon, C]] |
| - | [[Category: Zatsepin, N | + | [[Category: Zatsepin, N]] |
[[Category: Free electron laser]] | [[Category: Free electron laser]] | ||
[[Category: Photosynthesis]] | [[Category: Photosynthesis]] | ||
[[Category: Photosystem ii]] | [[Category: Photosystem ii]] | ||
[[Category: Time resolved]] | [[Category: Time resolved]] | ||
Revision as of 22:15, 24 December 2014
Serial Time-resolved crystallography of Photosystem II using a femtosecond X-ray laser The S1 state
| |||||||||||
Categories: Photosystem II | Thermosynechococcus elongatus | Aquila, A | Bari, S | Barty, A | Basu, S | Bergkamp, J J | Beyerlein, K | Bogan, M J | Boutet, S | Caleman, C | Chao, T C | Chapman, H N | Cobb, D E | Conrad, C E | Davis, K M | Deponte, D | Doak, R B | Fleckenstein, H | Frank, M | Fromme, P | Fromme, R | Galli, L | Grotjohann, I | Hau-Riege, S P | Hunter, M | James, D | Kassemeyer, S | Kirian, R A | Kupitz, C | Laksmono, H | Liang, M | Liu, H | Lomb, L | Marchesini, S | Martin, A V | Messerschmidt, M | Milathianaki, D | Moore, A L | Moore, T A | Nass, K | Pushkar, Y | Reeder, B | Rendek, K N | Ros, A | Roy-Chowdhury, S | Schmidt, K | Seibert, M | Shoeman, R L | Sierra, R G | Spence, J C.H | Steinbrener, J | Stellato, F | Wang, D | Weierstall, U | White, T A | Williams, G J | Yan, L | Yang, J H | Yoon, C | Zatsepin, N | Free electron laser | Photosynthesis | Photosystem ii | Time resolved
