This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
2ny5
From Proteopedia
(Difference between revisions)
| Line 3: | Line 3: | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[2ny5]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [http://en.wikipedia.org/wiki/Human_immunodeficiency_virus_1 Human immunodeficiency virus 1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2NY5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2NY5 FirstGlance]. <br> | <table><tr><td colspan='2'>[[2ny5]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [http://en.wikipedia.org/wiki/Human_immunodeficiency_virus_1 Human immunodeficiency virus 1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2NY5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2NY5 FirstGlance]. <br> | ||
| - | </td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=SUC:SUCROSE'>SUC</scene>< | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=SUC:SUCROSE'>SUC</scene></td></tr> |
| - | <tr><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1gc1|1gc1]], [[1rzj|1rzj]], [[1rzk|1rzk]], [[2nxy|2nxy]], [[2nxz|2nxz]], [[2ny0|2ny0]], [[2ny1|2ny1]], [[2ny2|2ny2]], [[2ny3|2ny3]], [[2ny4|2ny4]], [[2ny6|2ny6]], [[2ny7|2ny7]]</td></tr> | + | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1gc1|1gc1]], [[1rzj|1rzj]], [[1rzk|1rzk]], [[2nxy|2nxy]], [[2nxz|2nxz]], [[2ny0|2ny0]], [[2ny1|2ny1]], [[2ny2|2ny2]], [[2ny3|2ny3]], [[2ny4|2ny4]], [[2ny6|2ny6]], [[2ny7|2ny7]]</td></tr> |
| - | <tr><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">CD4 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 Homo sapiens])</td></tr> | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">CD4 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 Homo sapiens])</td></tr> |
| - | <tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ny5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ny5 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2ny5 RCSB], [http://www.ebi.ac.uk/pdbsum/2ny5 PDBsum]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ny5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ny5 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2ny5 RCSB], [http://www.ebi.ac.uk/pdbsum/2ny5 PDBsum]</span></td></tr> |
| - | <table> | + | </table> |
| + | == Function == | ||
| + | [[http://www.uniprot.org/uniprot/CD4_HUMAN CD4_HUMAN]] Accessory protein for MHC class-II antigen/T-cell receptor interaction. May regulate T-cell activation. Induces the aggregation of lipid rafts. | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
| Line 37: | Line 39: | ||
[[Category: Homo sapiens]] | [[Category: Homo sapiens]] | ||
[[Category: Human immunodeficiency virus 1]] | [[Category: Human immunodeficiency virus 1]] | ||
| - | [[Category: Arthos, J | + | [[Category: Arthos, J]] |
| - | [[Category: Burton, D R | + | [[Category: Burton, D R]] |
| - | [[Category: Dey, B | + | [[Category: Dey, B]] |
| - | [[Category: Dimitrov, D S | + | [[Category: Dimitrov, D S]] |
| - | [[Category: Hessell, A J | + | [[Category: Hessell, A J]] |
| - | [[Category: Kwong, P D | + | [[Category: Kwong, P D]] |
| - | [[Category: Nabel, G J | + | [[Category: Nabel, G J]] |
| - | [[Category: Ryk, D Van | + | [[Category: Ryk, D Van]] |
| - | [[Category: Sodroski, J | + | [[Category: Sodroski, J]] |
| - | [[Category: Wyatt, R | + | [[Category: Wyatt, R]] |
| - | [[Category: Xiang, S H | + | [[Category: Xiang, S H]] |
| - | [[Category: Xu, L | + | [[Category: Xu, L]] |
| - | [[Category: Yang, X | + | [[Category: Yang, X]] |
| - | [[Category: Zhang, M Y | + | [[Category: Zhang, M Y]] |
| - | [[Category: Zhou, T | + | [[Category: Zhou, T]] |
| - | [[Category: Zwick, M B | + | [[Category: Zwick, M B]] |
[[Category: Antibody]] | [[Category: Antibody]] | ||
[[Category: Cd4]] | [[Category: Cd4]] | ||
Revision as of 19:17, 25 December 2014
HIV-1 gp120 Envelope Glycoprotein (M95W, W96C, I109C, T257S, V275C, S334A, S375W, Q428C, A433M) Complexed with CD4 and Antibody 17b
| |||||||||||
Categories: Homo sapiens | Human immunodeficiency virus 1 | Arthos, J | Burton, D R | Dey, B | Dimitrov, D S | Hessell, A J | Kwong, P D | Nabel, G J | Ryk, D Van | Sodroski, J | Wyatt, R | Xiang, S H | Xu, L | Yang, X | Zhang, M Y | Zhou, T | Zwick, M B | Antibody | Cd4 | Gp120 | Hiv | Viral protein-immune system complex

