This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
3mm2
From Proteopedia
(Difference between revisions)
| Line 3: | Line 3: | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[3mm2]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bjerkandera_adusta Bjerkandera adusta]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MM2 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3MM2 FirstGlance]. <br> | <table><tr><td colspan='2'>[[3mm2]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bjerkandera_adusta Bjerkandera adusta]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MM2 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3MM2 FirstGlance]. <br> | ||
| - | </td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CYN:CYANIDE+ION'>CYN</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>< | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CYN:CYANIDE+ION'>CYN</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr> |
| - | <tr><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3mm1|3mm1]], [[3mm3|3mm3]]</td></tr> | + | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3mm1|3mm1]], [[3mm3|3mm3]]</td></tr> |
| - | <tr><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">dyp ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=5331 Bjerkandera adusta])</td></tr> | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">dyp ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=5331 Bjerkandera adusta])</td></tr> |
| - | <tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Dye_decolorizing_peroxidase Dye decolorizing peroxidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.11.1.19 1.11.1.19] </span></td></tr> | + | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Dye_decolorizing_peroxidase Dye decolorizing peroxidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.11.1.19 1.11.1.19] </span></td></tr> |
| - | <tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3mm2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3mm2 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3mm2 RCSB], [http://www.ebi.ac.uk/pdbsum/3mm2 PDBsum]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3mm2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3mm2 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3mm2 RCSB], [http://www.ebi.ac.uk/pdbsum/3mm2 PDBsum]</span></td></tr> |
| - | <table> | + | </table> |
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
== Publication Abstract from PubMed == | == Publication Abstract from PubMed == | ||
| Line 15: | Line 15: | ||
The catalytic mechanism of dye-decolorizing peroxidase DyP may require the swinging movement of an aspartic acid residue.,Yoshida T, Tsuge H, Konno H, Hisabori T, Sugano Y FEBS J. 2011 Jul;278(13):2387-94. doi: 10.1111/j.1742-4658.2011.08161.x., Epub 2011 May 31. PMID:21569205<ref>PMID:21569205</ref> | The catalytic mechanism of dye-decolorizing peroxidase DyP may require the swinging movement of an aspartic acid residue.,Yoshida T, Tsuge H, Konno H, Hisabori T, Sugano Y FEBS J. 2011 Jul;278(13):2387-94. doi: 10.1111/j.1742-4658.2011.08161.x., Epub 2011 May 31. PMID:21569205<ref>PMID:21569205</ref> | ||
| - | From | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> |
</div> | </div> | ||
== References == | == References == | ||
| Line 23: | Line 23: | ||
[[Category: Bjerkandera adusta]] | [[Category: Bjerkandera adusta]] | ||
[[Category: Dye decolorizing peroxidase]] | [[Category: Dye decolorizing peroxidase]] | ||
| - | [[Category: Sugano, Y | + | [[Category: Sugano, Y]] |
| - | [[Category: Tsuge, H | + | [[Category: Tsuge, H]] |
| - | [[Category: Yoshida, T | + | [[Category: Yoshida, T]] |
[[Category: Aspartic acid]] | [[Category: Aspartic acid]] | ||
[[Category: Beta barrel]] | [[Category: Beta barrel]] | ||
Revision as of 23:14, 3 January 2015
Dye-decolorizing peroxidase (DyP) in complex with cyanide
| |||||||||||
