This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
2dt5
From Proteopedia
(Difference between revisions)
| Line 3: | Line 3: | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[2dt5]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus_hb8 Thermus thermophilus hb8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DT5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2DT5 FirstGlance]. <br> | <table><tr><td colspan='2'>[[2dt5]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus_hb8 Thermus thermophilus hb8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DT5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2DT5 FirstGlance]. <br> | ||
| - | </td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>< | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> |
| - | <tr><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">TTHA1657 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=300852 Thermus thermophilus HB8])</td></tr> | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">TTHA1657 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=300852 Thermus thermophilus HB8])</td></tr> |
| - | <tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2dt5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dt5 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2dt5 RCSB], [http://www.ebi.ac.uk/pdbsum/2dt5 PDBsum], [http://www.topsan.org/Proteins/RSGI/2dt5 TOPSAN]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2dt5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dt5 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2dt5 RCSB], [http://www.ebi.ac.uk/pdbsum/2dt5 PDBsum], [http://www.topsan.org/Proteins/RSGI/2dt5 TOPSAN]</span></td></tr> |
| - | <table> | + | </table> |
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
| Line 20: | Line 20: | ||
</StructureSection> | </StructureSection> | ||
[[Category: Thermus thermophilus hb8]] | [[Category: Thermus thermophilus hb8]] | ||
| - | [[Category: Kita, A | + | [[Category: Kita, A]] |
| - | [[Category: Komori, H | + | [[Category: Komori, H]] |
| - | [[Category: Miki, K | + | [[Category: Miki, K]] |
| - | [[Category: Nakamura, A | + | [[Category: Nakamura, A]] |
| - | [[Category: Sosa, A | + | [[Category: Sosa, A]] |
[[Category: Dna binding protein]] | [[Category: Dna binding protein]] | ||
[[Category: Nad]] | [[Category: Nad]] | ||
| Line 30: | Line 30: | ||
[[Category: Redox sensing]] | [[Category: Redox sensing]] | ||
[[Category: Rex]] | [[Category: Rex]] | ||
| - | [[Category: | + | [[Category: Structural genomic]] |
[[Category: Rossmann fold]] | [[Category: Rossmann fold]] | ||
[[Category: Rsgi]] | [[Category: Rsgi]] | ||
| - | [[Category: Structural genomic]] | ||
[[Category: Thermus themophilus]] | [[Category: Thermus themophilus]] | ||
[[Category: Winged helix]] | [[Category: Winged helix]] | ||
Revision as of 17:37, 15 January 2015
Crystal Structure of TTHA1657 (AT-rich DNA-binding protein) from Thermus thermophilus HB8
| |||||||||||
Categories: Thermus thermophilus hb8 | Kita, A | Komori, H | Miki, K | Nakamura, A | Sosa, A | Dna binding protein | Nad | Nadh | Redox sensing | Rex | Structural genomic | Rossmann fold | Rsgi | Thermus themophilus | Winged helix
