2o2b
From Proteopedia
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| - | [[Image:2o2b.gif|left|200px]] | + | [[Image:2o2b.gif|left|200px]] |
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| - | '''Spectroscopic and Structural Study of the Heterotropic Linkage between Halide and Proton Ion Binding to Gfp Proteins: E2(GFP)-I Complex''' | + | {{Structure |
| + | |PDB= 2o2b |SIZE=350|CAPTION= <scene name='initialview01'>2o2b</scene>, resolution 1.94Å | ||
| + | |SITE= | ||
| + | |LIGAND= <scene name='pdbligand=IOD:IODIDE ION'>IOD</scene> | ||
| + | |ACTIVITY= | ||
| + | |GENE= GFP ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=6100 Aequorea victoria]) | ||
| + | }} | ||
| + | |||
| + | '''Spectroscopic and Structural Study of the Heterotropic Linkage between Halide and Proton Ion Binding to Gfp Proteins: E2(GFP)-I Complex''' | ||
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==Overview== | ==Overview== | ||
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==About this Structure== | ==About this Structure== | ||
| - | 2O2B is a [ | + | 2O2B is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Aequorea_victoria Aequorea victoria]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2O2B OCA]. |
==Reference== | ==Reference== | ||
| - | Spectroscopic and structural study of proton and halide ion cooperative binding to gfp., Arosio D, Garau G, Ricci F, Marchetti L, Bizzarri R, Nifosi R, Beltram F, Biophys J. 2007 Jul 1;93(1):232-44. Epub 2007 Apr 13. PMID:[http:// | + | Spectroscopic and structural study of proton and halide ion cooperative binding to gfp., Arosio D, Garau G, Ricci F, Marchetti L, Bizzarri R, Nifosi R, Beltram F, Biophys J. 2007 Jul 1;93(1):232-44. Epub 2007 Apr 13. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/17434942 17434942] |
[[Category: Aequorea victoria]] | [[Category: Aequorea victoria]] | ||
[[Category: Single protein]] | [[Category: Single protein]] | ||
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[[Category: variant]] | [[Category: variant]] | ||
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 17:54:11 2008'' |
Revision as of 15:54, 20 March 2008
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| , resolution 1.94Å | |||||||
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| Ligands: | |||||||
| Gene: | GFP (Aequorea victoria) | ||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
Spectroscopic and Structural Study of the Heterotropic Linkage between Halide and Proton Ion Binding to Gfp Proteins: E2(GFP)-I Complex
Overview
This study reports the influence of halogens on fluorescence properties of the Aequorea victoria Green Fluorescent Protein variant S65T/T203Y (E(2)GFP). Halide binding forms a specific nonfluorescent complex generating a substantial drop of the fluorescence via static quenching. Spectroscopic analysis under different solution conditions reveals high halogen affinity, which is strongly dependent on the pH. This evidences the presence in E(2)GFP of interacting binding sites for halide ions and for protons. Thermodynamic link and cooperative interaction are assessed demonstrating that binding of one halide ion is associated with the binding of one proton in a cooperative fashion with the formation, in the pH range 4.5-10, of a single fully protonated E(2)GFP.halogen complex. To resolve the structural determinants of E(2)GFP sensitivity to halogens, high-resolution crystallographic structures were obtained for the halide-free and I(-), Br(-), and Cl(-) bound E(2)GFP. Remarkably the first high-resolution (1.4 A) crystallographic structure of a chloride-bound GFP is reported. The chloride ion occupies a specific and unique binding pocket in direct contact (3.4 A) with the chromophore imidazolidinone aromatic ring. Unanticipated flexibility, strongly modulated by halide ion interactions, is observed in the region surrounding the chromophore. Furthermore molecular dynamics simulations identified E222 residue (along with the chromophore Y66 residue) being in the protonated state when E(2)GFP.halogen complex is formed. The impact of these results on high-sensitivity biosensor design will be discussed.
About this Structure
2O2B is a Single protein structure of sequence from Aequorea victoria. Full crystallographic information is available from OCA.
Reference
Spectroscopic and structural study of proton and halide ion cooperative binding to gfp., Arosio D, Garau G, Ricci F, Marchetti L, Bizzarri R, Nifosi R, Beltram F, Biophys J. 2007 Jul 1;93(1):232-44. Epub 2007 Apr 13. PMID:17434942
Page seeded by OCA on Thu Mar 20 17:54:11 2008
Categories: Aequorea victoria | Single protein | Garau, G. | IOD | Bioluminescence | Bromide | E2 | Fluorescent chloride | Gfp | Green fluorescent protein | Halogen | Iodine | Luminescence | Photoactive protein | Variant
