4hob

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
-
{{STRUCTURE_4hob| PDB=4hob | SCENE= }}
+
==The crystal structure of the Zalpha domain from Cyprinid Herpes virus 3==
-
===The crystal structure of the Zalpha domain from Cyprinid Herpes virus 3===
+
<StructureSection load='4hob' size='340' side='right' caption='[[4hob]], [[Resolution|resolution]] 1.76&Aring;' scene=''>
-
{{ABSTRACT_PUBMED_23365431}}
+
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[4hob]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Carp_nephritis_and_gill_necrosis_virus Carp nephritis and gill necrosis virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4HOB OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4HOB FirstGlance]. <br>
 +
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
 +
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1j75|1j75]], [[1qbj|1qbj]], [[1oyi|1oyi]]</td></tr>
 +
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">KHVJ122, ORF112 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=180230 Carp nephritis and gill necrosis virus])</td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4hob FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4hob OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4hob RCSB], [http://www.ebi.ac.uk/pdbsum/4hob PDBsum]</span></td></tr>
 +
</table>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Zalpha domains are a subfamily of the winged helix-turn-helix domains sharing the unique ability to recognize CpG repeats in the left-handed Z-DNA conformation. In vertebrates, domains of this family are found exclusively in proteins that detect foreign nucleic acids and activate components of the antiviral interferon response. Moreover, poxviruses encode the Zalpha domain-containing protein E3L, a well-studied and potent inhibitor of interferon response. Here we describe a herpesvirus Zalpha-domain-containing protein (ORF112) from cyprinid herpesvirus 3. We demonstrate that ORF112 also binds CpG repeats in the left-handed conformation, and moreover, its structure at 1.75 A reveals the Zalpha fold found in ADAR1, DAI, PKZ, and E3L. Unlike other Zalpha domains, however, ORF112 forms a dimer through a unique domain-swapping mechanism. Thus, ORF112 may be considered a new member of the Z-domain family having DNA binding properties similar to those of the poxvirus E3L inhibitor of interferon response.
-
==About this Structure==
+
Crystal structure of a poxvirus-like zalpha domain from cyprinid herpesvirus 3.,Tome AR, Kus K, Correia S, Paulo LM, Zacarias S, de Rosa M, Figueiredo D, Parkhouse RM, Athanasiadis A J Virol. 2013 Apr;87(7):3998-4004. doi: 10.1128/JVI.03116-12. Epub 2013 Jan 30. PMID:23365431<ref>PMID:23365431</ref>
-
[[4hob]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Cyprinid_herpesvirus_3 Cyprinid herpesvirus 3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4HOB OCA].
+
-
==Reference==
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
<ref group="xtra">PMID:023365431</ref><references group="xtra"/><references/>
+
</div>
-
[[Category: Cyprinid herpesvirus 3]]
+
== References ==
-
[[Category: Athanasiadis, A.]]
+
<references/>
-
[[Category: Figueiredo, D.]]
+
__TOC__
-
[[Category: Kus, K.]]
+
</StructureSection>
-
[[Category: Paulo, L.]]
+
[[Category: Carp nephritis and gill necrosis virus]]
-
[[Category: Rosa, M.]]
+
[[Category: Athanasiadis, A]]
-
[[Category: Tome, A R.]]
+
[[Category: Figueiredo, D]]
 +
[[Category: Kus, K]]
 +
[[Category: Paulo, L M]]
 +
[[Category: Rosa, M de]]
 +
[[Category: Tome, A R]]
[[Category: Dna and rna binding]]
[[Category: Dna and rna binding]]
[[Category: Dna binding protein]]
[[Category: Dna binding protein]]
[[Category: Domain swapping]]
[[Category: Domain swapping]]
[[Category: Z-dna binding domain]]
[[Category: Z-dna binding domain]]

Revision as of 11:42, 4 March 2015

The crystal structure of the Zalpha domain from Cyprinid Herpes virus 3

4hob, resolution 1.76Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools