User:Jaime Prilusky/Evolutionary Trace
From Proteopedia
< User:Jaime Prilusky(Difference between revisions)
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This is a test page to test evolutionary coloring generated by the [http://mammoth.bcm.tmc.edu/uet/index.html Evolutionary Trace] server at Baylor College of Medicine. | This is a test page to test evolutionary coloring generated by the [http://mammoth.bcm.tmc.edu/uet/index.html Evolutionary Trace] server at Baylor College of Medicine. | ||
| - | <table ><tr> | + | <table ><tr><td colspan='3'> |
| + | <jmol> | ||
| + | <jmolCheckbox> | ||
| + | <target>jmol_1a09</target> | ||
| + | <scriptWhenChecked>set syncMouse on;set syncScript on;sync * on;</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>sync * off;</scriptWhenUnchecked> | ||
| + | <text>Synchronize the 3 models for rotation with your mouse.</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol> | ||
| + | </td></tr><tr> | ||
<td> | <td> | ||
<jmol><jmolApplet> | <jmol><jmolApplet> | ||
<title>1a09</title> | <title>1a09</title> | ||
| + | <name>jmol_1a09</name> | ||
<color>white</color><size>300</size> | <color>white</color><size>300</size> | ||
<script>load =1A09;frank off;load /wiki/extensions/Proteopedia/spt/initialview01.spt;spin off;</script> | <script>load =1A09;frank off;load /wiki/extensions/Proteopedia/spt/initialview01.spt;spin off;</script> | ||
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</jmol> | </jmol> | ||
</td> | </td> | ||
| + | |||
<td> | <td> | ||
<jmol><jmolApplet> | <jmol><jmolApplet> | ||
<title>Consurf 1a09</title> | <title>Consurf 1a09</title> | ||
| + | <name>jmol_consurf</name> | ||
<color>white</color><size>300</size> | <color>white</color><size>300</size> | ||
| - | <script>load =1A09;frank off;load /wiki/extensions/Proteopedia/spt/initialview01.spt;spin off;</script> | + | <script>load =1A09;frank off;load /wiki/extensions/Proteopedia/spt/initialview01.spt;spin off;select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/a0/1a09_consurf.spt"</script> |
<pspeed>8</pspeed> | <pspeed>8</pspeed> | ||
| - | <caption> | + | <caption>Consurf coloring</caption> |
<controls>spin popup</controls> | <controls>spin popup</controls> | ||
</jmolApplet> | </jmolApplet> | ||
</jmol> | </jmol> | ||
</td> | </td> | ||
| + | |||
<td> | <td> | ||
<jmol><jmolApplet> | <jmol><jmolApplet> | ||
<title>ET 1a09</title> | <title>ET 1a09</title> | ||
| + | <name>jmol_ET</name> | ||
<color>white</color><size>300</size> | <color>white</color><size>300</size> | ||
| - | <script>load =1A09;frank off;load /wiki/extensions/Proteopedia/spt/initialview01.spt;spin off;</script> | + | <script>load =1A09;frank off;load /wiki/extensions/Proteopedia/spt/initialview01.spt;spin off;select all and not water;dots;spacefill;script "/wiki/ettest/1a09_ETlevels_Jmol.txt";script "/wiki/ettest/ET_coloringscript_Jmol.txt";</script> |
<pspeed>8</pspeed> | <pspeed>8</pspeed> | ||
| - | <caption> | + | <caption>Evolutionary Trace coloring</caption> |
| - | <controls>spin popup</controls> | + | <controls>spin popup</controls>0 |
</jmolApplet></jmol> | </jmolApplet></jmol> | ||
</td></tr> | </td></tr> | ||
| Line 41: | Line 55: | ||
<td>[[Image:Scale pyetv.png|300px]]</td></tr> | <td>[[Image:Scale pyetv.png|300px]]</td></tr> | ||
</table> | </table> | ||
| - | |||
| - | |||
| - | select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dk/1a09_consurf.spt" | ||
| - | |||
| - | <!-- | ||
| - | <StructureSection load='1a09' size='340' side='right' caption='Caption for this structure' scene=''> | ||
| - | |||
| - | This is a sample scene created with SAT to <scene name="/12/3456/Sample/1">color</scene> by Group, and another to make <scene name="/12/3456/Sample/2">a transparent representation</scene> of the protein. You can make your own scenes on SAT starting from scratch or loading and editing one of these sample scenes. | ||
| - | |||
| - | </StructureSection> | ||
| - | == References == | ||
| - | <references/> | ||
| - | --> | ||
Current revision
Evolutionary Trace
This is a test page to test evolutionary coloring generated by the Evolutionary Trace server at Baylor College of Medicine.
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