This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5bj3

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
-
[[Image:5bj3.gif|left|200px]]<br /><applet load="5bj3" size="350" color="white" frame="true" align="right" spinBox="true"
+
[[Image:5bj3.gif|left|200px]]
-
caption="5bj3, resolution 2.2&Aring;" />
+
 
-
'''THERMUS THERMOPHILUS ASPARTATE AMINOTRANSFERASE TETRA MUTANT 1'''<br />
+
{{Structure
 +
|PDB= 5bj3 |SIZE=350|CAPTION= <scene name='initialview01'>5bj3</scene>, resolution 2.2&Aring;
 +
|SITE=
 +
|LIGAND= <scene name='pdbligand=PLP:PYRIDOXAL-5'-PHOSPHATE'>PLP</scene>
 +
|ACTIVITY= [http://en.wikipedia.org/wiki/Aspartate_transaminase Aspartate transaminase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.6.1.1 2.6.1.1]
 +
|GENE=
 +
}}
 +
 
 +
'''THERMUS THERMOPHILUS ASPARTATE AMINOTRANSFERASE TETRA MUTANT 1'''
 +
 
==Overview==
==Overview==
Line 7: Line 16:
==About this Structure==
==About this Structure==
-
5BJ3 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Thermus_aquaticus Thermus aquaticus] with <scene name='pdbligand=PLP:'>PLP</scene> as [http://en.wikipedia.org/wiki/ligand ligand]. Active as [http://en.wikipedia.org/wiki/Aspartate_transaminase Aspartate transaminase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.6.1.1 2.6.1.1] Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5BJ3 OCA].
+
5BJ3 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Thermus_aquaticus Thermus aquaticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5BJ3 OCA].
==Reference==
==Reference==
-
Substrate recognition mechanism of thermophilic dual-substrate enzyme., Ura H, Nakai T, Kawaguchi SI, Miyahara I, Hirotsu K, Kuramitsu S, J Biochem. 2001 Jul;130(1):89-98. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=11432784 11432784]
+
Substrate recognition mechanism of thermophilic dual-substrate enzyme., Ura H, Nakai T, Kawaguchi SI, Miyahara I, Hirotsu K, Kuramitsu S, J Biochem. 2001 Jul;130(1):89-98. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/11432784 11432784]
[[Category: Aspartate transaminase]]
[[Category: Aspartate transaminase]]
[[Category: Single protein]]
[[Category: Single protein]]
Line 24: Line 33:
[[Category: pyridoxal enzyme]]
[[Category: pyridoxal enzyme]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 19:14:52 2008''
+
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 19:11:38 2008''

Revision as of 17:11, 20 March 2008


PDB ID 5bj3

Drag the structure with the mouse to rotate
, resolution 2.2Å
Ligands:
Activity: Aspartate transaminase, with EC number 2.6.1.1
Coordinates: save as pdb, mmCIF, xml



THERMUS THERMOPHILUS ASPARTATE AMINOTRANSFERASE TETRA MUTANT 1


Overview

Aspartate aminotransferase from an extremely thermophilic bacterium, Thermus thermophilus HB8 (ttAspAT), has been believed to be specific for an acidic substrate. However, stepwise introduction of mutations in the active-site residues finally changed its substrate specificity to that of a dual-substrate enzyme. The final mutant, [S15D, T17V, K109S, S292R] ttAspAT, is active toward both acidic and hydrophobic substrates. During the course of stepwise mutation, the activities toward acidic and hydrophobic substrates changed independently. The introduction of a mobile Arg292* residue into ttAspAT was the key step in the change to a "dual-substrate" enzyme. The substrate recognition mechanism of this thermostable "dual-substrate" enzyme was confirmed by X-ray crystallography. This work together with previous studies on various enzymes suggest that this unique "dual-substrate recognition" mechanism is a feature of not only aminotransferases but also other enzymes.

About this Structure

5BJ3 is a Single protein structure of sequence from Thermus aquaticus. Full crystallographic information is available from OCA.

Reference

Substrate recognition mechanism of thermophilic dual-substrate enzyme., Ura H, Nakai T, Kawaguchi SI, Miyahara I, Hirotsu K, Kuramitsu S, J Biochem. 2001 Jul;130(1):89-98. PMID:11432784

Page seeded by OCA on Thu Mar 20 19:11:38 2008

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools