NADP-dependent malic enzyme

From Proteopedia

(Difference between revisions)

@@ Line 34: / Line 34: @@
 == In structures ==
 Lysozyme is found in 595 PDB entries<br>
-<br>Eukaryota (16 PDB entries): <br><br><b>Homo sapiens</b> (1 PDB entries): <br>
+{{#tree:*<b>Eukaryota<b> (16 PDB entries)**<b>Homo sapiens</b> (1 PDB entries)
-[[4uis]] <div class="pdb-prints 4uis"></div><br><br>Title: The cryoEM structure of human gamma-Secretase complex<br>
+***[[4uis]] <div class="pdb-prints 4uis"></div>Title: The cryoEM structure of human gamma-Secretase complex
 Experimental EM map [http://pdbe.org/emd-2974 emd-2974]. <br>
-.4 A resolution <br>
+.4 A resolution
-Other macromolecules also in this entry: GAMMA-SECRETASE, Nicastrin, Presenilin-1 NTF subunit, . <br><br>
+Other macromolecules also in this entry: GAMMA-SECRETASE, Nicastrin, Presenilin-1 NTF subunit, .
-<br/>
-<br><b>Hevea brasiliensis</b> (7 PDB entries): <br>
+**<b>Hevea brasiliensis</b> (7 PDB entries)
-[[1kqy]] <div class="pdb-prints 1kqy"></div><br><br>Title: Hevamine Mutant D125A/E127A/Y183F in Complex with Penta-NAG<br>
+***[[1kqy]] <div class="pdb-prints 1kqy"></div>Title: Hevamine Mutant D125A/E127A/Y183F in Complex with Penta-NAG
-.92 A resolution <br>
+.92 A resolution
-<br>
-[http://www.ebi.ac.uk/pdbe/entry/search/index?organism_scientific:"Hevea brasiliensis"&molecule_name:"Lysozyme" Search for other PDB entries] <br/>
+***[http://www.ebi.ac.uk/pdbe/entry/search/index?organism_scientific:"Hevea brasiliensis"&molecule_name:"Lysozyme" Search for other PDB entries]
-<br><b>Meretrix lusoria</b> (3 PDB entries): <br>
+**<b>Meretrix lusoria</b> (3 PDB entries)
-[[4pj2]] <div class="pdb-prints 4pj2"></div><br><br>Title: Crystal structure of Aeromonas hydrophila PliI in complex with Meretrix lusoria lysozyme<br>
+***[[4pj2]] <div class="pdb-prints 4pj2"></div>Title: Crystal structure of Aeromonas hydrophila PliI in complex with Meretrix lusoria lysozyme
-.24 A resolution <br>
+.24 A resolution
-Other macromolecules also in this entry: Putative exported protein, . <br><br>
+Other macromolecules also in this entry: Putative exported protein, .
-[http://www.ebi.ac.uk/pdbe/entry/search/index?organism_scientific:"Meretrix lusoria"&molecule_name:"Lysozyme" Search for other PDB entries] <br/>
+***[http://www.ebi.ac.uk/pdbe/entry/search/index?organism_scientific:"Meretrix lusoria"&molecule_name:"Lysozyme" Search for other PDB entries]
-<br><b>Antheraea mylitta</b> (1 PDB entries): <br>
+**<b>Antheraea mylitta</b> (1 PDB entries)
-[[1iiz]] <div class="pdb-prints 1iiz"></div><br><br>Title: Crystal Structure of the Induced Antibacterial Protein from Tasar Silkworm, Antheraea mylitta<br>
+***[[1iiz]] <div class="pdb-prints 1iiz"></div>Title: Crystal Structure of the Induced Antibacterial Protein from Tasar Silkworm, Antheraea mylitta
-.4 A resolution <br>
+.4 A resolution
-<br>
-<br/>
-<br><b>Ruditapes philippinarum</b> (1 PDB entries): <br>
+**<b>Ruditapes philippinarum</b> (1 PDB entries)
-[[2dqa]] <div class="pdb-prints 2dqa"></div><br><br>Title: Crystal Structure of Tapes japonica Lysozyme<br>
+***[[2dqa]] <div class="pdb-prints 2dqa"></div>Title: Crystal Structure of Tapes japonica Lysozyme
-.6 A resolution <br>
+.6 A resolution
-<br>
-<br/>
-<br><b>Mus musculus</b> (1 PDB entries): <br>
+**<b>Mus musculus</b> (1 PDB entries)
-[[1iak]] <div class="pdb-prints 1iak"></div><br><br>Title: HISTOCOMPATIBILITY ANTIGEN I-AK<br>
+***[[1iak]] <div class="pdb-prints 1iak"></div>Title: HISTOCOMPATIBILITY ANTIGEN I-AK
-.9 A resolution <br>
+.9 A resolution
-Other macromolecules also in this entry: H-2 class II histocompatibility antigen, A-K beta chain, H-2 class II histocompatibility antigen, A-K alpha chain. <br><br>
+Other macromolecules also in this entry: H-2 class II histocompatibility antigen, A-K beta chain, H-2 class II histocompatibility antigen, A-K alpha chain.
-<br/>
-<br><b>Bombyx mori</b> (2 PDB entries): <br>
+**<b>Bombyx mori</b> (2 PDB entries)
-[[1gd6]] <div class="pdb-prints 1gd6"></div><br><br>Title: STRUCTURE OF THE BOMBYX MORI LYSOZYME<br>
+***[[1gd6]] <div class="pdb-prints 1gd6"></div>Title: STRUCTURE OF THE BOMBYX MORI LYSOZYME
-.5 A resolution <br>
+.5 A resolution
-<br>
-[http://www.ebi.ac.uk/pdbe/entry/search/index?organism_scientific:"Bombyx mori"&molecule_name:"Lysozyme" Search for other PDB entries] <br/>
+***[http://www.ebi.ac.uk/pdbe/entry/search/index?organism_scientific:"Bombyx mori"&molecule_name:"Lysozyme" Search for other PDB entries]
-<br>Viruses (578 PDB entries): <br><br><b>Enterobacteria phage P22</b> (2 PDB entries): <br>
+*<b>Viruses<b> (578 PDB entries)**<b>Enterobacteria phage P22</b> (2 PDB entries)
-[[2anv]] <div class="pdb-prints 2anv"></div><br><br>Title: crystal structure of P22 lysozyme mutant L86M<br>
+***[[2anv]] <div class="pdb-prints 2anv"></div>Title: crystal structure of P22 lysozyme mutant L86M
-.04 A resolution <br>
+.04 A resolution
-<br>
-[http://www.ebi.ac.uk/pdbe/entry/search/index?organism_scientific:"Enterobacteria phage P22"&molecule_name:"Lysozyme" Search for other PDB entries] <br/>
+***[http://www.ebi.ac.uk/pdbe/entry/search/index?organism_scientific:"Enterobacteria phage P22"&molecule_name:"Lysozyme" Search for other PDB entries]
-<br><b>Enterobacteria phage P21</b> (2 PDB entries): <br>
+**<b>Enterobacteria phage P21</b> (2 PDB entries)
-[[3hdf]] <div class="pdb-prints 3hdf"></div><br><br>Title: Crystal structure of truncated endolysin R21 from phage 21<br>
+***[[3hdf]] <div class="pdb-prints 3hdf"></div>Title: Crystal structure of truncated endolysin R21 from phage 21
-.7 A resolution <br>
+.7 A resolution
-<br>
-[http://www.ebi.ac.uk/pdbe/entry/search/index?organism_scientific:"Enterobacteria phage P21"&molecule_name:"Lysozyme" Search for other PDB entries] <br/>
+***[http://www.ebi.ac.uk/pdbe/entry/search/index?organism_scientific:"Enterobacteria phage P21"&molecule_name:"Lysozyme" Search for other PDB entries]
-<br><b>Enterobacteria phage T4</b> (561 PDB entries): <br>
+**<b>Enterobacteria phage T4</b> (561 PDB entries)
-[[1swy]] <div class="pdb-prints 1swy"></div><br><br>Title: Use of a Halide Binding Site to Bypass the 1000-atom Limit to Ab initio Structure Determination<br>
+***[[1swy]] <div class="pdb-prints 1swy"></div>Title: Use of a Halide Binding Site to Bypass the 1000-atom Limit to Ab initio Structure Determination
-.06 A resolution <br>
+.06 A resolution
-<br>
-[http://www.ebi.ac.uk/pdbe/entry/search/index?organism_scientific:"Enterobacteria phage T4"&molecule_name:"Lysozyme" Search for other PDB entries] <br/>
+***[http://www.ebi.ac.uk/pdbe/entry/search/index?organism_scientific:"Enterobacteria phage T4"&molecule_name:"Lysozyme" Search for other PDB entries]
-<br><b>Escherichia phage T5</b> (1 PDB entries): <br>
+**<b>Escherichia phage T5</b> (1 PDB entries)
-[[2mxz]] <div class="pdb-prints 2mxz"></div><br><br>Title: Bacteriophage T5 l-alanoyl-d-glutamate peptidase comlpex with Zn2+ (Endo T5-ZN2+)<br>
+***[[2mxz]] <div class="pdb-prints 2mxz"></div>Title: Bacteriophage T5 l-alanoyl-d-glutamate peptidase comlpex with Zn2+ (Endo T5-ZN2+)
-N/A A resolution <br>
+N/A A resolution
-<br>
-<br/>
-<br><b>Enterobacteria phage lambda</b> (3 PDB entries): <br>
+**<b>Enterobacteria phage lambda</b> (3 PDB entries)
-[[1am7]] <div class="pdb-prints 1am7"></div><br><br>Title: Lysozyme from bacteriophage lambda<br>
+***[[1am7]] <div class="pdb-prints 1am7"></div>Title: Lysozyme from bacteriophage lambda
-.3 A resolution <br>
+.3 A resolution
-<br>
-[http://www.ebi.ac.uk/pdbe/entry/search/index?organism_scientific:"Enterobacteria phage lambda"&molecule_name:"Lysozyme" Search for other PDB entries] <br/>
+***[http://www.ebi.ac.uk/pdbe/entry/search/index?organism_scientific:"Enterobacteria phage lambda"&molecule_name:"Lysozyme" Search for other PDB entries]
-<br><b>Streptococcus phage CP-7</b> (1 PDB entries): <br>
+**<b>Streptococcus phage CP-7</b> (1 PDB entries)
-[[4cvd]] <div class="pdb-prints 4cvd"></div><br><br>Title: Crystal structure of the central repeat of cell wall binding module of Cpl7<br>
+***[[4cvd]] <div class="pdb-prints 4cvd"></div>Title: Crystal structure of the central repeat of cell wall binding module of Cpl7
-.666 A resolution <br>
+.666 A resolution
-<br>
-<br/>
-<br><b>Enterobacteria phage P1</b> (2 PDB entries): <br>
+**<b>Enterobacteria phage P1</b> (2 PDB entries)
-[[1xju]] <div class="pdb-prints 1xju"></div><br><br>Title: Crystal structure of secreted inactive form of P1 phage endolysin Lyz<br>
+***[[1xju]] <div class="pdb-prints 1xju"></div>Title: Crystal structure of secreted inactive form of P1 phage endolysin Lyz
-.07 A resolution <br>
+.07 A resolution
-<br>
-[http://www.ebi.ac.uk/pdbe/entry/search/index?organism_scientific:"Enterobacteria phage P1"&molecule_name:"Lysozyme" Search for other PDB entries] <br/>
+***[http://www.ebi.ac.uk/pdbe/entry/search/index?organism_scientific:"Enterobacteria phage P1"&molecule_name:"Lysozyme" Search for other PDB entries]
-<br><b>Streptococcus phage Cp-1</b> (6 PDB entries): <br>
+**<b>Streptococcus phage Cp-1</b> (6 PDB entries)
-[[2j8g]] <div class="pdb-prints 2j8g"></div><br><br>Title: Crystal structure of the modular Cpl-1 endolysin complexed with a peptidoglycan analogue (E94Q mutant in complex with a tetrasaccharide- pentapeptide)<br>
+***[[2j8g]] <div class="pdb-prints 2j8g"></div>Title: Crystal structure of the modular Cpl-1 endolysin complexed with a peptidoglycan analogue (E94Q mutant in complex with a tetrasaccharide- pentapeptide)
-.69 A resolution <br>
+.69 A resolution
-<br>
-[http://www.ebi.ac.uk/pdbe/entry/search/index?organism_scientific:"Streptococcus phage Cp-1"&molecule_name:"Lysozyme" Search for other PDB entries] <br/>
+***[http://www.ebi.ac.uk/pdbe/entry/search/index?organism_scientific:"Streptococcus phage Cp-1"&molecule_name:"Lysozyme" Search for other PDB entries]
-<br>Bacteria (1 PDB entries): <br><br><b>Enterobacteria phage T4</b> (1 PDB entries): <br>
+*<b>Bacteria<b> (1 PDB entries)**<b>Enterobacteria phage T4</b> (1 PDB entries)
-[[2qb0]] <div class="pdb-prints 2qb0"></div><br><br>Title: Structure of the 2TEL crystallization module fused to T4 lysozyme with an Ala-Gly-Pro linker.<br>
+***[[2qb0]] <div class="pdb-prints 2qb0"></div>Title: Structure of the 2TEL crystallization module fused to T4 lysozyme with an Ala-Gly-Pro linker.
-.56 A resolution <br>
+.56 A resolution
-Other macromolecules also in this entry: Transcription factor ETV6, . <br><br>
+Other macromolecules also in this entry: Transcription factor ETV6, .
-<br/>
-<br><b>Escherichia coli</b> (1 PDB entries): <br>
+**<b>Escherichia coli</b> (1 PDB entries)
-[[2qb0]] <div class="pdb-prints 2qb0"></div><br><br>Title: Structure of the 2TEL crystallization module fused to T4 lysozyme with an Ala-Gly-Pro linker.<br>
+***[[2qb0]] <div class="pdb-prints 2qb0"></div>Title: Structure of the 2TEL crystallization module fused to T4 lysozyme with an Ala-Gly-Pro linker.
-.56 A resolution <br>
+.56 A resolution
-Other macromolecules also in this entry: Transcription factor ETV6, . <br><br>
+Other macromolecules also in this entry: Transcription factor ETV6, .
-<br/>
+}}

Revision as of 20:04, 9 September 2015

Lysozyme

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Molecule Lysozyme, also known as Lysozyme, CP-7 lysin, Muramidase, Endolysin, 1,4-beta-N-acetylmuramidase, Lysis protein, CP-1 lysin, Lysozyme murein hydrolase, Protein gp17, Transglycosylase, Hevamine-A, Chitinase and L-alanyl-D-glutamate peptidase.

1 Function
2 Disease
3 Relevance
4 Structural highlights
5 Biological process
6 In structures

Function

lysozyme activity
catalytic activity
hydrolase activity
hydrolase activity, acting on glycosyl bonds
carbon-oxygen lyase activity, acting on polysaccharides
lyase activity
chitinase activity
hydrolase activity, hydrolyzing O-glycosyl compounds
sequence-specific DNA binding

Disease

Relevance

Structural highlights

Biological process

Is involved in the following biological processes:
cell wall macromolecule catabolic process
peptidoglycan catabolic process
metabolic process
defense response to bacterium
cytolysis
viral release from host cell
carbohydrate metabolic process
chitin catabolic process
polysaccharide catabolic process
cytolysis by virus of host cell
cell wall organization

In structures

Lysozyme is found in 595 PDB entries

Experimental EM map emd-2974.
4.4 A resolution Other macromolecules also in this entry: GAMMA-SECRETASE, Nicastrin, Presenilin-1 NTF subunit, .

1.92 A resolution

1.24 A resolution Other macromolecules also in this entry: Putative exported protein, .

2.4 A resolution

1.6 A resolution

1.9 A resolution Other macromolecules also in this entry: H-2 class II histocompatibility antigen, A-K beta chain, H-2 class II histocompatibility antigen, A-K alpha chain.

2.5 A resolution

1.04 A resolution

1.7 A resolution

1.06 A resolution

N/A A resolution

2.3 A resolution

1.666 A resolution

1.07 A resolution

1.69 A resolution

2.56 A resolution Other macromolecules also in this entry: Transcription factor ETV6, .

Proteopedia Page Contributors and Editors (what is this?)

PDBe, Jaime Prilusky, Michal Harel

Retrieved from "http://52.214.119.220/wiki/index.php/NADP-dependent_malic_enzyme"

NADP-dependent malic enzyme

From Proteopedia

Revision as of 20:04, 9 September 2015

Lysozyme

Contents

Function

Disease

Relevance

Structural highlights

Biological process

In structures

Proteopedia Page Contributors and Editors (what is this?)

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