This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2ou5

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:11, 11 September 2015) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2ou5.gif|left|200px]]
+
==Crystal structure of a pyridoxamine 5'-phosphate oxidase-related fmn-binding protein (jann_0254) from jannaschia sp. ccs1 at 1.60 A resolution==
-
 
+
<StructureSection load='2ou5' size='340' side='right' caption='[[2ou5]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
-
{{Structure
+
== Structural highlights ==
-
|PDB= 2ou5 |SIZE=350|CAPTION= <scene name='initialview01'>2ou5</scene>, resolution 1.600&Aring;
+
<table><tr><td colspan='2'>[[2ou5]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Jansc Jansc]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OU5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2OU5 FirstGlance]. <br>
-
|SITE=
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
|LIGAND= <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene> and <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>
+
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
|ACTIVITY=
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">YP_508196.1, Jann_0254 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=290400 JANSC])</td></tr>
-
|GENE= YP_508196.1, Jann_0254 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=290400 Jannaschia sp. CCS1])
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ou5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ou5 OCA], [http://pdbe.org/2ou5 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2ou5 RCSB], [http://www.ebi.ac.uk/pdbsum/2ou5 PDBsum], [http://www.topsan.org/Proteins/JCSG/2ou5 TOPSAN]</span></td></tr>
-
}}
+
</table>
-
 
+
== Evolutionary Conservation ==
-
'''Crystal structure of pyridoxamine 5'-phosphate oxidase-related FMN-binding (YP_508196.1) from Jannaschia sp. CCS1 at 1.60 A resolution'''
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
==About this Structure==
+
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ou/2ou5_consurf.spt"</scriptWhenChecked>
-
2OU5 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Jannaschia_sp._ccs1 Jannaschia sp. ccs1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OU5 OCA].
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Jannaschia sp. ccs1]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Single protein]]
+
</jmolCheckbox>
-
[[Category: JCSG, Joint Center for Structural Genomics.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
-
[[Category: FMN]]
+
<div style="clear:both"></div>
-
[[Category: GOL]]
+
__TOC__
-
[[Category: SO4]]
+
</StructureSection>
-
[[Category: jcsg]]
+
[[Category: Jansc]]
-
[[Category: joint center for structural genomic]]
+
[[Category: Structural genomic]]
-
[[Category: protein structure initiative]]
+
[[Category: Flavoprotein]]
-
[[Category: psi-2]]
+
[[Category: Jcsg]]
-
[[Category: pyridoxamine 5'-phosphate oxidase]]
+
[[Category: PSI, Protein structure initiative]]
-
[[Category: pyridoxamine 5'-phosphate oxidase-related fmn-binding]]
+
[[Category: Split barrel-like fold]]
-
[[Category: structural genomic]]
+
-
[[Category: yp_508196 1]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 18:04:34 2008''
+

Current revision

Crystal structure of a pyridoxamine 5'-phosphate oxidase-related fmn-binding protein (jann_0254) from jannaschia sp. ccs1 at 1.60 A resolution

2ou5, resolution 1.60Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools