1g7q
From Proteopedia
| Line 4: | Line 4: | ||
|PDB= 1g7q |SIZE=350|CAPTION= <scene name='initialview01'>1g7q</scene>, resolution 1.60Å | |PDB= 1g7q |SIZE=350|CAPTION= <scene name='initialview01'>1g7q</scene>, resolution 1.60Å | ||
|SITE= | |SITE= | ||
| - | |LIGAND= <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene> | + | |LIGAND= <scene name='pdbligand=FUC:ALPHA-L-FUCOSE'>FUC</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene> |
|ACTIVITY= | |ACTIVITY= | ||
|GENE= | |GENE= | ||
| + | |DOMAIN= | ||
| + | |RELATEDENTRY=[[1vac|1VAC]], [[2vaa|2VAA]] | ||
| + | |RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1g7q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1g7q OCA], [http://www.ebi.ac.uk/pdbsum/1g7q PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1g7q RCSB]</span> | ||
}} | }} | ||
| Line 29: | Line 32: | ||
[[Category: Wilson, I A.]] | [[Category: Wilson, I A.]] | ||
[[Category: Yu, M.]] | [[Category: Yu, M.]] | ||
| - | [[Category: NAG]] | ||
[[Category: h-2kb]] | [[Category: h-2kb]] | ||
[[Category: mhc class i]] | [[Category: mhc class i]] | ||
| Line 36: | Line 38: | ||
[[Category: vntr]] | [[Category: vntr]] | ||
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 30 20:38:32 2008'' |
Revision as of 17:38, 30 March 2008
| |||||||
| , resolution 1.60Å | |||||||
|---|---|---|---|---|---|---|---|
| Ligands: | , | ||||||
| Related: | 1VAC, 2VAA
| ||||||
| Resources: | FirstGlance, OCA, PDBsum, RCSB | ||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
CRYSTAL STRUCTURE OF MHC CLASS I H-2KB HEAVY CHAIN COMPLEXED WITH BETA-2 MICROGLOBULIN AND MUC1 VNTR PEPTIDE SAPDTRPA
Overview
Peptides bind with high affinity to MHC class I molecules by anchoring certain side-chains (anchors) into specificity pockets in the MHC peptide-binding groove. Peptides that do not contain these canonical anchor residues normally have low affinity, resulting in impaired pMHC stability and loss of immunogenicity. Here, we report the crystal structure at 1.6 A resolution of an immunogenic, low-affinity peptide from the tumor-associated antigen MUC1, bound to H-2Kb. Stable binding is still achieved despite small, non-canonical residues in the C and F anchor pockets. This structure reveals how low-affinity peptides can be utilized in the design of novel peptide-based tumor vaccines. The molecular interactions elucidated in this non-canonical low-affinity peptide MHC complex should help uncover additional immunogenic peptides from primary protein sequences and aid in the design of alternative approaches for T-cell vaccines.
About this Structure
1G7Q is a Protein complex structure of sequences from Mus musculus. Full crystallographic information is available from OCA.
Reference
Crystal structure of a non-canonical low-affinity peptide complexed with MHC class I: a new approach for vaccine design., Apostolopoulos V, Yu M, Corper AL, Teyton L, Pietersz GA, McKenzie IF, Wilson IA, Plebanski M, J Mol Biol. 2002 May 17;318(5):1293-305. PMID:12083518
Page seeded by OCA on Sun Mar 30 20:38:32 2008
Categories: Mus musculus | Protein complex | Apostolopoulos, V. | Corper, A L. | McKenzie, I F. | Pietersz, G A. | Teyton, L. | Wilson, I A. | Yu, M. | H-2kb | Mhc class i | Muc1 | Mucin | Vntr
