This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


Transfer RNA (tRNA)

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 32: Line 32:
__NOTOC__
__NOTOC__
==3D Structures of tRNA==
==3D Structures of tRNA==
-
===Free tRNA===
+
Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}
-
====yeast phenylalanine tRNA====
+
{{#tree:id=OrganizedByTopic|openlevels=0|
-
* [[1ehz]]
+
-
* [[1evv]]
+
-
* [[1tra]]
+
-
* [[4tra]]
+
-
* [[4tna]]
+
-
* [[6tna]]
+
-
====human lysine tRNA (primer of HIV1 reverse transcription)====
+
-
* [[1fir]]
+
-
====yeast aspartic acid tRNA====
+
-
* [[2tra]]
+
-
* [[3tra]]
+
-
====''E. coli'' initiatior methionine tRNA====
+
-
* [[3cw5]]
+
-
* [[3cw6]]
+
-
===tRNA fragments===
+
-
* [[1bz2]]
+
-
* [[1bz3]]
+
-
* [[1bzt]]
+
-
* [[1bzu]]
+
-
* [[1feq]]
+
-
* [[1fl8]]
+
-
* [[2jrq]]
+
-
* [[3ova]]
+
-
===Complexes with aminoacyl-tRNA synthetases===
+
-
* [[1wz2]]
+
-
* [[1efw]]
+
-
* [[1gax]]
+
-
* [[1j1u]]
+
-
* [[1gtr]]
+
-
===Complexes with elongation factors===
+
-
* [[1ttt]]
+
-
===Complex with RNAse P===
+
-
* [[3ok7]]
+
-
===Complexes with the ribosome===
+
-
* [[3f1h]]
+
-
* [[486d]]
+
 +
*Ala-tRNA
 +
 +
**[[3wqy]], [[3wqz]] – AfRNA + Ala-tRNA synthetase – Archaeoglobus fulgidus<br />
 +
 +
*Arg-tRNA
 +
 +
**[[1f7u]], [[1f7v]] – yRNA + Arg-tRNA synthetase + Arg - yeast<br />
 +
**[[4x4n]], [[4x4p]], [[4x4t]], [[4x4u]] – AfRNA minihelix + CCA adding enzyme <br />
 +
**[[4x4o]], [[4x4q]], [[4x4r]], [[4x4s]], [[4x4v]] – AfRNA minihelix + CCA adding enzyme + nucleotide<br />
 +
 +
*Asn-tRNA
 +
 +
**[[3kfu]] – TtRNA + Glu-tRNA amidotransferase – Thermus thermophilus <br />
 +
**[[4wj4]] – PaRNA + Asp-tRNA synthetase + Asp - Pseudomonas aeruginosa <br />
 +
 +
*Asp-tRNA
 +
 +
**[[1eqr]] – EcRNA – Escherichia coli <br />
 +
**[[1vtq]] – yRNA <br />
 +
**[[1asy]], [[1asz]] – yRNA + Asp-tRNA synthetase <br />
 +
**[[1efw]] – EcRNA + Asp-tRNA synthetase <br />
 +
**[[1c0a]] – EcRNA + Asp-tRNA synthetase + Asp-AMP<br />
 +
**[[1il2]] – yRNA + Asp-tRNA synthetase + Asp-AMP<br />
 +
 +
*Cys-tRNA
 +
 +
**[[1u0b]] – EcRNA + Cys-tRNA synthetase <br />
 +
**[[2du3]], [[2du4]], [[2du5]], [[2du6]] – AfRNA + phosphoSer-tRNA synthetase <br />
 +
**[[2zzn]] – MjRNA + ATRM5 - Methanococcus jannaschii <br />
 +
 +
 +
*Sec-tRNA (selenocysteine-tRNA)
 +
 +
**[[3rg5]] – RNA – mouse<br />
 +
**[[3a3a]] – hRNA – human<br />
 +
**[[3hl2]] – hRNA + phosphoSer-tRNA synthetase <br />
 +
**[[4rqe]], [[4rqf]] – hRNA + Ser-tRNA synthetase <br />
 +
**[[3adb]], [[3adc]], [[3add]] – MjRNA + phosphoSer-tRNA synthetase + AMPPNP<br />
 +
**[[3w3s]] – AaRNA + Ser-tRNA synthetase - Aquifex aeolicus <br />
 +
**[[3w1k]] – EcRNA + Sec-tRNA synthetase <br />
 +
 +
*Glu-tRNA
 +
 +
**[[1gtr]], [[1gts]] – EcRNA + Glu-tRNA synthetase <br />
 +
**[[1g59]] – TtRNA + Glu-tRNA synthetase <br />
 +
**[[1n77]] – TtRNA + Glu-tRNA synthetase + ATP<br />
 +
**[[2cv0]] – TtRNA + Glu-tRNA synthetase + Glu<br />
 +
**[[2cv2]] – TtRNA + Glu-tRNA synthetase + Glu-AMS<br />
 +
**[[2cv1]] – TtRNA + Glu-tRNA synthetase + ATP + Glu<br />
 +
**[[1n78]], [[2dxi]] – TtRNA + Glu-tRNA synthetase + glutamol-ATP<br />
 +
**[[2d6f]] – RNA + Glu-tRNA amidotransferase – Methanothermobacter thermautotrophicus<br />
 +
**[[2der]], [[2det]], [[2deu]] – EcRNA + MNMA <br />
 +
 +
*Gln-tRNA
 +
 +
**[[1qrs]], [[1qrt]], [[1qru]], [[1qtq]], [[1exd]], [[1euq]], [[1euy]] – EcRNA + Gln-tRNA synthetase <br />
 +
**[[1zjw]] – EcRNA + Gln-tRNA synthetase + Gln<br />
 +
**[[4jxx]], [[4jxz]], [[4jyz]] – EcRNA + Gln-tRNA synthetase + ATP<br />
 +
**[[3akz]] – TmRNA + Gln-tRNA synthetase + Glu-AMP – Thermotoga maritima<br />
 +
**[[3al0]] - TmRNA + Glu-tRNA amidotransferase<br />
 +
 +
*Gly-tRNA
 +
 +
**[[4mgm]] – GkRNA – Geobacillus kaustophilus<br />
 +
**[[4mgn]] – GkRNA + T-box riboswitch<br />
 +
**[[4lck]], [[4tzp]], [[4tzv]], [[4tzw]] – BsRNA + ribosomal protein YBXF + T-box riboswitch – Bacillus subtilis<br />
 +
**[[4kr2]], [[4kr3]] – hRNA + Gly-tRNA synthetase <br />
 +
 +
*His-tRNA
 +
 +
**[[3wc1]], [[3wc2]] – RNA + His-tRNA-specific guanylyltransferase – Candida albicans<br />
 +
**[[4rdx]] – TtRNA + His-tRNA synthetase <br />
 +
 +
*Ile-tRNA
 +
 +
**[[1qu2]], [[1qu3]], [[1ffy]] – RNA + Ile-tRNA synthetase – Staphylococcus aureus<br />
 +
**[[3a2k]] – RNA + Ile-tRNA synthetase – Geobacillus kaustophilus<br />
 +
 +
*Leu-tRNA
 +
 +
**[[1wz2]] – PhRNA + Leu-tRNA synthetase – Pyrococcus horikoshii<br />
 +
**[[2bte]], [[2byt]] – TtRNA + Leu-tRNA synthase <br />
 +
**[[2v0g]] – TtRNA + Leu-tRNA synthase + antifungal agent<br />
 +
**[[2nqp]], [[2nr0]], [[2nre]] – EcRNA + tRNA pseudouridine synthase <br />
 +
**[[4aq7]], [[4cqn]] – EcRNA + Leu-tRNA synthetase + Leu-AMP<br />
 +
**[[4arc]] – EcRNA + Leu-tRNA synthetase + Leu<br />
 +
**[[4ari]], [[4as1]], [[3zjt]], [[3zju]], [[3zjv]] – EcRNA + Leu-tRNA synthetase + benzoxarborole<br />
 +
**[[3zgz]] – EcRNA + Leu-tRNA synthetase + agrocin<br />
 +
**[[2zzm]] – MjRNA + ATRM5 <br />
 +
**[[3j5y]], [[3j5s]] – hRNA + ERF1 + ERF3A + mRNA <br />
 +
**[[5ah5]] – RNA + Leu-tRNA synthetase + Leu-AMS – Agrobacterium radiobacter<br />
 +
 +
*Lys-tRNA
 +
 +
**[[1fir]] – bRNA primer - bovine<br />
 +
**[[1krs]], [[1krt]] – EcRNA - NMR<br />
 +
**[[5ccx]] – hRNA + tRNA methyltransferase <br />
 +
**[[5ccb]], [[5cd1]] – hRNA + tRNA methyltransferase + SAH<br />
 +
 +
*PyroLys-tRNA
 +
 +
**[[2zni]] – RNA + PyrLys-tRNA synthetase – Desulfitobacterium hafniense<br />
 +
 +
*Met-tRNA
 +
 +
**[[2csx]] – AaRNA + Met-tRNA synthetase <br />
 +
 +
 +
*Phe-tRNA
 +
 +
**[[1ehz]], [[4tna]], [[6tna]], [[1tra]], [[1tn2]], [[1tn1]], [[1fcw]] – yRNA <br />
 +
**[[1eiy]], [[2iy5]], [[3tup]] – TtRNA + Phe-tRNA synthetase <br />
 +
**[[2iy5]] – TtRNA + Phe-tRNA synthetase + Phe-AMP<br />
 +
**[[3tup]] – hRNA + Phe-tRNA synthetase <br />
 +
**[[3foz]], [[2zm5]] – EcRNA + tRNA isopentenyltransferase<br />
 +
**[[2zxu]] – EcRNA + tRNA isopentenyltransferase + DMASPP<br />
 +
**[[4yco]] – EcRNA + tRNA dihydrouridine synthetase <br />
 +
**[[3q1q]], [[3q1r]] – TmRNA + RNase <br />
 +
**[[3izy]] – bRNA + IF-2<br />
 +
 +
*Pro-tRNA
 +
 +
**[[1h4s]] – TtRNA + Pro-tRNA synthetase + ATP <br />
 +
**[[1h4q]] – TtRNA + Pro-tRNA synthetase + ATP + prolinol<br />
 +
 +
*Ser-tRNA
 +
 +
**[[1ser]] – TtRNA + Ser-tRNA synthetase <br />
 +
 +
*Thr-tRNA
 +
 +
**[[1qf6]] – EcRNA + Thr-tRNA synthetase <br />
 +
**[[2fk6]], [[4gcw]] – BsRNA + RNase <br />
 +
**[[4yye]] – yRNA + Thr-tRNA synthetase + Thr-AMP<br />
 +
 +
*Trp-tRNA
 +
 +
**[[2ake]] – bRNA + Trp-tRNA synthetase <br />
 +
**[[2dr2]] – hRNA + Trp-tRNA synthetase <br />
 +
**[[4ycp]] – EcRNA + tRNA dihydrouridine synthetase <br />
 +
 +
*Tyr-tRNA
 +
 +
**[[1h3e]] – TtRNA + Tyr-tRNA synthetase + ATP + tyrosinol<br />
 +
**[[1j1u]] – MjRNA + Tyr-tRNA synthetase + tyrosine <br />
 +
**[[2dlc]] – yRNA + Tyr-tRNA synthetase + Tyr-AMP<br />
 +
 +
*Val-tRNA
 +
 +
**[[1gax]], [[1ivs]] – TtRNA + Val-tRNA synthetase + Val-AMP<br />
 +
**[[1j2b]] – PhRNA + tRNA guanine transglycosylate <br />
 +
 +
*Initiator tRNA (Formyl-methionine-tRNA)
 +
 +
**[[3cw5]], [[3cw6]] – EcRNA <br />
 +
**[[1yfg]] – yRNA <br />
 +
**[[2fmt]] – yRNA + methionyl-tRNAfMet formyltransferase<br />
 +
**[[1qvf]] – RNA – Haloarcula marismortui<br />
 +
**[[3qsy]] – SsRNA + IF-2 – Sulfolobus solfataricus<br />
 +
**[[3v11]] – SsRNA + IF-2 + GDPNP<br />
 +
 +
*tRNA
 +
 +
**[[2dr7]], [[2dr9]], [[2drb]], [[2zh3]], [[2zh4]], [[2zh5]], [[2zh7]], [[2zh8]], [[2zh9]], [[2zhb]], [[3ouy]], [[3ov7]], [[3ova]], [[3ovb]], [[3ovs]] – RNA 33-mer + CCA adding enzyme <br />
 +
**[[2dr8]], [[2dra]], [[2zh1]], [[2zh2]], [[2zh6]], [[2zha]] – RNA 33-mer + CCA adding enzyme + nucleotide<br />
 +
**[[3eph]], [[3epj]], [[3epk]], [[3epl]] – RNA + ytRNA isopentenyltransferase<br />
 +
**[[3b0v]] – TtRNA + tRNA dihydrouridine synthetase <br />
 +
**[[4yvi]], [[4yvj]], [[4yvk]] – RNA + tRNA methyltransferase + sinefungin – Haemophilus influenzae<br />
 +
 +
*tRNA in the ribosome
 +
 +
**[[4v9c]], [[486d]], [[1mj1]], [[1ml5]], [[1pn7]], [[1pn8]], [[1zo1]], [[1zo3]], [[3deg]], [[3ep2]], [[3eq3]], [[3eq4]], [[3j46]], [[4v49]], [[4v4v]], [[4v4w]], [[4v50]], [[4v5h]], [[4v69]], [[4v6d]], [[4v6e]], [[4v6k]], [[4v6l]], [[4v6n]], [[4v6o]], [[4v6p]], [[4v6q]], [[4v6r]], [[4v6s]], [[4v6v]], [[4v6y]], [[4v6z]], [[4v70]], [[4v71]], [[4v72]], [[4v73]], [[4v74]], [[4v75]], [[4v76]], [[4v77]], [[4v78]], [[4v79]], [[4v7a]], [[4v7c]], [[4v7d]], [[4v9c]], [[3j7z]], [[3j9z]], [[3ja1]], [[4woi]], [[5gad]], [[5gae]], [[5gag]], [[5gah]], [[5gaf]] – EcRNA <br />
 +
**[[1jgo]], [[1jgp]], [[1jgq]], [[1xnq]], [[1xnr]], [[2om7]], [[3t1h]], [[3t1y]], [[4gkj]], [[4gkk]], [[4jv5]], [[4jya]], [[4v42]], [[4v48]], [[4v4i]], [[4v4j]], [[4v4p]], [[4v4r]], [[4v4s]], [[4v4t]], [[4v4x]], [[4v4y]], [[4v4z]], [[4v51]], [[4v5a]], [[4v5c]], [[4v5d]], [[4v5e]], [[4v5f]], [[4v5g]], [[4v5j]], [[4v5k]], [[4v5l]], [[4v5m]], [[4v5n]], [[4v5p]], [[4v5q]], [[4v5r]], [[4v5s]], [[4v63]], [[4v67]], [[4v68]], [[4v6a]], [[4v6f]], [[4v6g]], [[4v7l]], [[4v7m]], [[4v7p]], [[4v87]], [[4v8b]], [[4v8c]], [[4v8d]], [[4v8e]], [[4v8f]], [[4v8j]], [[4v8n]], [[4v8o]], [[4v8q]], [[4v95]], [[4v97]], [[4v9a]], [[4v9b]], [[4v9h]], [[4v9i]], [[4v9j]], [[4v9n]], [[4v9q]], [[4v9r]], [[4v9s]], [[1vvj]], [[4l47]], [[4l71]], [[4lel]], [[4lfz]], [[4lnt]], [[4lsk]], [[4lt8]], [[4p70]], [[1vy4]], [[1vy5]], [[1vy6]], [[1vy7]], [[4p6f]], [[4w29]], [[4w2e]], [[4w2f]], [[4w2g]], [[4w2h]], [[4w2i]], [[4wt8]], [[4wpo]], [[4wqf]], [[4wqu]], [[4wqy]], [[4y4p]], [[4tua]], [[4tub]], [[4tuc]], [[4tud]], [[4tue]], [[4z8c]], [[4zer]], [[4z3s]], [[4wq1]], [[4wqr]], [[4wr6]], [[4wra]], [[4wro]], [[4wsd]], [[4wsm]], [[4wt1]], [[4wu1]], [[4wzd]], [[4wzo]], [[5aa0]], [[5d8b]], [[4w4g]], [[4ypb]], [[4yzv]], [[5doy]], [[5e7k]], [[5e81]], [[5el4]], [[5el5]] – TtRNA <br />
 +
**[[1njm]], [[1njp]] – RNA – Deinococcus radiodurans<br />
 +
**[[1qvf]] – RNA – Haloarcula marismortui<br />
 +
**[[3j0l]], [[3j0o]], [[3j0p]], [[3j0q]], [[4uje]], [[4ujc]], [[4ujd]], [[3j92]], [[3jaj]], [[3jan]], [[3jag]], [[3jah]], [[3jai]] – RNA – rabbit<br />
 +
**[[3j16]], [[3j6b]], [[4v6i]], [[4v8y]], [[4v8z]], [[5gak]] – yRNA <br />
 +
**[[4v4n]] – MjRNA <br />
 +
**[[4v5z]] – RNA - dog<br />
 +
**[[4v6u]] – RNA – Pyrococcus furiosus<br />
 +
**[[4v6w]] – RNA – Drosophila melanogaster<br />
 +
**[[4v6x]], [[3j7y]], [[3j9m]], [[4ug0]], [[5a8l]] – hRNA <br />
 +
**[[4v7e]] – RNA - wheat<br />
 +
**[[4v7h]] – RNA - Thermomyces lanuginosus<br />
 +
**[[4v8m]] – RNA – Trypanosoma brucei<br />
 +
**[[3j7a]], [[3jbn]], [[3jbo]], [[3jbp]] – RNA – Plasmodium falciparum<br />
 +
**[[3j7r]], [[4v19]], [[5aj3]], [[5aj4]] – RNA - pig<br />
 +
**[[4wj3]] – PaRNA <br />
 +
**[[3j9w]] – BsRNA <br />
 +
**[[3jbu]] – RNA - Bolitoglossa<br />
 +
}}
==See Also==
==See Also==
* [[Translation]]
* [[Translation]]

Revision as of 11:46, 24 February 2016

Yeast Phe-tRNA (PDB code 1ehz)

Drag the structure with the mouse to rotate

3D Structures of tRNA

Updated on 24-February-2016



See Also

References

  1. ↑ Motorin Y, Helm M. tRNA stabilization by modified nucleotides. Biochemistry. 2010 Jun 22;49(24):4934-44. PMID:20459084 doi:10.1021/bi100408z

Reference for the structure

  • Shi H, Moore PB. The crystal structure of yeast phenylalanine tRNA at 1.93 A resolution: a classic structure revisited. RNA. 2000 Aug;6(8):1091-105. PMID:10943889
Retrieved from "http://52.214.119.220/wiki/index.php/Transfer_RNA_%28tRNA%29"
Personal tools