This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3mfn

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: {{Seed}} 200px <!-- The line below this paragraph, containing "STRUCTURE_3mfn", creates the "Structure Box" on the page. You may change the PDB parameter (which se...)
Current revision (13:30, 4 August 2016) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3mfn.jpg|left|200px]]
 
-
<!--
+
==Dfer_2879 protein of unknown function from Dyadobacter fermentans==
-
The line below this paragraph, containing "STRUCTURE_3mfn", creates the "Structure Box" on the page.
+
<StructureSection load='3mfn' size='340' side='right' caption='[[3mfn]], [[Resolution|resolution]] 2.02&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3mfn]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Dyafd Dyafd]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MFN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3MFN FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene></td></tr>
-
-->
+
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
{{STRUCTURE_3mfn| PDB=3mfn | SCENE= }}
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Dfer_2879 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=471854 DYAFD])</td></tr>
-
 
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3mfn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3mfn OCA], [http://pdbe.org/3mfn PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3mfn RCSB], [http://www.ebi.ac.uk/pdbsum/3mfn PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3mfn ProSAT]</span></td></tr>
-
===Dfer_2879 protein of unknown function from Dyadobacter fermentans===
+
</table>
-
 
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
==About this Structure==
+
Check<jmol>
-
3MFN is a 4 chains structure with sequences from [http://en.wikipedia.org/wiki/Dyadobacter_fermentans Dyadobacter fermentans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MFN OCA].
+
<jmolCheckbox>
-
[[Category: Dyadobacter fermentans]]
+
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/mf/3mfn_consurf.spt"</scriptWhenChecked>
-
[[Category: Chin, S.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Cui, H.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Edwards, A M.]]
+
</jmolCheckbox>
-
[[Category: Eisen, J.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3mfn ConSurf].
-
[[Category: Joachimiak, A.]]
+
<div style="clear:both"></div>
-
[[Category: Kerfeld, C.]]
+
__TOC__
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
</StructureSection>
-
[[Category: Osipiuk, J.]]
+
[[Category: Dyafd]]
-
[[Category: Savchenko, A.]]
+
[[Category: Chin, S]]
-
[[Category: Wu, D.]]
+
[[Category: Cui, H]]
-
[[Category: Xu, X.]]
+
[[Category: Edwards, A M]]
 +
[[Category: Eisen, J]]
 +
[[Category: Joachimiak, A]]
 +
[[Category: Kerfeld, C]]
 +
[[Category: Structural genomic]]
 +
[[Category: Osipiuk, J]]
 +
[[Category: Savchenko, A]]
 +
[[Category: Wu, D]]
 +
[[Category: Xu, X]]
[[Category: Mcsg]]
[[Category: Mcsg]]
-
[[Category: Midwest center for structural genomic]]
+
[[Category: PSI, Protein structure initiative]]
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi-2]]
+
-
[[Category: Structural genomic]]
+
[[Category: Unknown function]]
[[Category: Unknown function]]
- 
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Apr 14 09:56:07 2010''
 

Current revision

Dfer_2879 protein of unknown function from Dyadobacter fermentans

3mfn, resolution 2.02Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3mfn"
Personal tools