This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
3mfn
From Proteopedia
(Difference between revisions)
| (2 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | {{STRUCTURE_3mfn| PDB=3mfn | SCENE= }} | ||
| - | ===Dfer_2879 protein of unknown function from Dyadobacter fermentans=== | ||
| - | == | + | ==Dfer_2879 protein of unknown function from Dyadobacter fermentans== |
| - | [[3mfn]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/ | + | <StructureSection load='3mfn' size='340' side='right' caption='[[3mfn]], [[Resolution|resolution]] 2.02Å' scene=''> |
| - | [[ | + | == Structural highlights == |
| - | [[ | + | <table><tr><td colspan='2'>[[3mfn]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Dyafd Dyafd]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MFN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3MFN FirstGlance]. <br> |
| - | [[ | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene></td></tr> |
| - | [ | + | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> |
| - | [[ | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Dfer_2879 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=471854 DYAFD])</td></tr> |
| - | [ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3mfn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3mfn OCA], [http://pdbe.org/3mfn PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3mfn RCSB], [http://www.ebi.ac.uk/pdbsum/3mfn PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3mfn ProSAT]</span></td></tr> |
| - | [[ | + | </table> |
| - | [ | + | == Evolutionary Conservation == |
| - | [[ | + | [[Image:Consurf_key_small.gif|200px|right]] |
| - | [[Category: | + | Check<jmol> |
| - | [[Category: | + | <jmolCheckbox> |
| - | [[Category: | + | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/mf/3mfn_consurf.spt"</scriptWhenChecked> |
| - | [[Category: | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> |
| - | [[Category: | + | <text>to colour the structure by Evolutionary Conservation</text> |
| - | [[Category: | + | </jmolCheckbox> |
| - | [[Category: | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3mfn ConSurf]. |
| + | <div style="clear:both"></div> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Dyafd]] | ||
| + | [[Category: Chin, S]] | ||
| + | [[Category: Cui, H]] | ||
| + | [[Category: Edwards, A M]] | ||
| + | [[Category: Eisen, J]] | ||
| + | [[Category: Joachimiak, A]] | ||
| + | [[Category: Kerfeld, C]] | ||
[[Category: Structural genomic]] | [[Category: Structural genomic]] | ||
| + | [[Category: Osipiuk, J]] | ||
| + | [[Category: Savchenko, A]] | ||
| + | [[Category: Wu, D]] | ||
| + | [[Category: Xu, X]] | ||
| + | [[Category: Mcsg]] | ||
| + | [[Category: PSI, Protein structure initiative]] | ||
[[Category: Unknown function]] | [[Category: Unknown function]] | ||
Current revision
Dfer_2879 protein of unknown function from Dyadobacter fermentans
| |||||||||||
Categories: Dyafd | Chin, S | Cui, H | Edwards, A M | Eisen, J | Joachimiak, A | Kerfeld, C | Structural genomic | Osipiuk, J | Savchenko, A | Wu, D | Xu, X | Mcsg | PSI, Protein structure initiative | Unknown function
