This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3oiz

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (22:04, 5 August 2016) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3oiz.jpg|left|200px]]
 
-
<!--
+
==Crystal structure of antisigma-factor antagonist, STAS domain from Rhodobacter sphaeroides==
-
The line below this paragraph, containing "STRUCTURE_3oiz", creates the "Structure Box" on the page.
+
<StructureSection load='3oiz' size='340' side='right' caption='[[3oiz]], [[Resolution|resolution]] 1.65&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3oiz]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhos4 Rhos4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3OIZ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3OIZ FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
-->
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">RHOS4_40800, RSP_4197 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=272943 RHOS4])</td></tr>
-
{{STRUCTURE_3oiz| PDB=3oiz | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3oiz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3oiz OCA], [http://pdbe.org/3oiz PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3oiz RCSB], [http://www.ebi.ac.uk/pdbsum/3oiz PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3oiz ProSAT]</span></td></tr>
-
 
+
</table>
-
===Crystal structure of antisigma-factor antagonist, STAS domain from Rhodobacter sphaeroides===
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
==About this Structure==
+
<jmolCheckbox>
-
3OIZ is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhodobacter_sphaeroides Rhodobacter sphaeroides]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3OIZ OCA].
+
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/oi/3oiz_consurf.spt"</scriptWhenChecked>
-
[[Category: Rhodobacter sphaeroides]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Chang, C.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Freeman, L.]]
+
</jmolCheckbox>
-
[[Category: Joachimiak, A.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3oiz ConSurf].
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
<div style="clear:both"></div>
-
[[Category: Marshall, N.]]
+
__TOC__
 +
</StructureSection>
 +
[[Category: Rhos4]]
 +
[[Category: Chang, C]]
 +
[[Category: Freeman, L]]
 +
[[Category: Joachimiak, A]]
 +
[[Category: Structural genomic]]
 +
[[Category: Marshall, N]]
[[Category: Mcsg]]
[[Category: Mcsg]]
[[Category: Membrane protein]]
[[Category: Membrane protein]]
-
[[Category: Midwest center for structural genomic]]
+
[[Category: PSI, Protein structure initiative]]
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi-2]]
+
[[Category: Stas domain]]
[[Category: Stas domain]]
- 
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Fri Sep 10 14:03:44 2010''
 

Current revision

Crystal structure of antisigma-factor antagonist, STAS domain from Rhodobacter sphaeroides

3oiz, resolution 1.65Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools