This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3m92

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (23:09, 5 August 2016) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3m92.jpg|left|200px]]
 
-
<!--
+
==The structure of yciN, an unchracterized protein from Shigella flexneri.==
-
The line below this paragraph, containing "STRUCTURE_3m92", creates the "Structure Box" on the page.
+
<StructureSection load='3m92' size='340' side='right' caption='[[3m92]], [[Resolution|resolution]] 2.05&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3m92]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Shigella_flexneri_2a_str._2457t Shigella flexneri 2a str. 2457t]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3M92 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3M92 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-
-->
+
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
{{STRUCTURE_3m92| PDB=3m92 | SCENE= }}
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">S1360, SF1275, yciN ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=198215 Shigella flexneri 2a str. 2457T])</td></tr>
-
 
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3m92 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3m92 OCA], [http://pdbe.org/3m92 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3m92 RCSB], [http://www.ebi.ac.uk/pdbsum/3m92 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3m92 ProSAT]</span></td></tr>
-
===The structure of yciN, an unchracterized protein from Shigella flexneri.===
+
</table>
-
 
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
==About this Structure==
+
Check<jmol>
-
3M92 is a 2 chains structure with sequences from [http://en.wikipedia.org/wiki/Shigella_flexneri_2a Shigella flexneri 2a]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3M92 OCA].
+
<jmolCheckbox>
-
[[Category: Shigella flexneri 2a]]
+
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/m9/3m92_consurf.spt"</scriptWhenChecked>
-
[[Category: Chin, S.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Cuff, M E.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Cui, H.]]
+
</jmolCheckbox>
-
[[Category: Edwards, A.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3m92 ConSurf].
-
[[Category: Joachimiak, A.]]
+
<div style="clear:both"></div>
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
__TOC__
-
[[Category: Savchenko, A.]]
+
</StructureSection>
-
[[Category: Xu, X.]]
+
[[Category: Shigella flexneri 2a str. 2457t]]
 +
[[Category: Chin, S]]
 +
[[Category: Cuff, M E]]
 +
[[Category: Cui, H]]
 +
[[Category: Edwards, A]]
 +
[[Category: Joachimiak, A]]
 +
[[Category: Structural genomic]]
 +
[[Category: Savchenko, A]]
 +
[[Category: Xu, X]]
[[Category: Duf2498]]
[[Category: Duf2498]]
[[Category: Mcsg]]
[[Category: Mcsg]]
-
[[Category: Midwest center for structural genomic]]
+
[[Category: PSI, Protein structure initiative]]
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi-2]]
+
-
[[Category: Structural genomic]]
+
[[Category: Unknown function]]
[[Category: Unknown function]]
- 
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu May 20 09:49:43 2010''
 

Current revision

The structure of yciN, an unchracterized protein from Shigella flexneri.

3m92, resolution 2.05Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3m92"
Personal tools