This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3oqb

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: {{Seed}} 200px <!-- The line below this paragraph, containing "STRUCTURE_3oqb", creates the "Structure Box" on the page. You may change the PDB parameter (which se...)
Current revision (10:07, 11 August 2016) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3oqb.jpg|left|200px]]
 
-
<!--
+
==CRYSTAL STRUCTURE OF putative oxidoreductase from Bradyrhizobium japonicum USDA 110==
-
The line below this paragraph, containing "STRUCTURE_3oqb", creates the "Structure Box" on the page.
+
<StructureSection load='3oqb' size='340' side='right' caption='[[3oqb]], [[Resolution|resolution]] 2.60&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3oqb]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Bradu Bradu]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3OQB OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3OQB FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
-->
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">BAC48105.1, blr2840 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=224911 BRADU])</td></tr>
-
{{STRUCTURE_3oqb| PDB=3oqb | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3oqb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3oqb OCA], [http://pdbe.org/3oqb PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3oqb RCSB], [http://www.ebi.ac.uk/pdbsum/3oqb PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3oqb ProSAT]</span></td></tr>
-
 
+
</table>
-
===CRYSTAL STRUCTURE OF putative oxidoreductase from Bradyrhizobium japonicum USDA 110===
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
==About this Structure==
+
<jmolCheckbox>
-
3OQB is a 8 chains structure with sequences from [http://en.wikipedia.org/wiki/Bradyrhizobium_japonicum Bradyrhizobium japonicum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3OQB OCA].
+
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/oq/3oqb_consurf.spt"</scriptWhenChecked>
-
[[Category: Bradyrhizobium japonicum]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Almo, S C.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Burley, S K.]]
+
</jmolCheckbox>
-
[[Category: Malashkevich, V N.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3oqb ConSurf].
-
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]
+
<div style="clear:both"></div>
-
[[Category: Sauder, J M.]]
+
__TOC__
-
[[Category: Toro, R.]]
+
</StructureSection>
 +
[[Category: Bradu]]
 +
[[Category: Almo, S C]]
 +
[[Category: Burley, S K]]
 +
[[Category: Malashkevich, V N]]
 +
[[Category: Structural genomic]]
 +
[[Category: Sauder, J M]]
 +
[[Category: Toro, R]]
[[Category: Crystal structure]]
[[Category: Crystal structure]]
-
[[Category: New york sgx research center for structural genomic]]
+
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]
-
[[Category: New york structural genomix research consortium]]
+
-
[[Category: Nysgxrc]]
+
[[Category: Oxidoreductase]]
[[Category: Oxidoreductase]]
-
[[Category: Protein structure initiative]]
+
[[Category: PSI, Protein structure initiative]]
-
[[Category: Psi-2]]
+
-
[[Category: Structural genomic]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Sep 15 10:56:57 2010''
+

Current revision

CRYSTAL STRUCTURE OF putative oxidoreductase from Bradyrhizobium japonicum USDA 110

3oqb, resolution 2.60Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools