This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
4etq
From Proteopedia
(Difference between revisions)
| Line 1: | Line 1: | ||
| + | |||
==Vaccinia virus D8L IMV envelope protein in complex with Fab of murine IgG2a LA5== | ==Vaccinia virus D8L IMV envelope protein in complex with Fab of murine IgG2a LA5== | ||
<StructureSection load='4etq' size='340' side='right' caption='[[4etq]], [[Resolution|resolution]] 2.10Å' scene=''> | <StructureSection load='4etq' size='340' side='right' caption='[[4etq]], [[Resolution|resolution]] 2.10Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[4etq]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/ | + | <table><tr><td colspan='2'>[[4etq]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Lk3_transgenic_mice Lk3 transgenic mice] and [http://en.wikipedia.org/wiki/Vaccinia_virus Vaccinia virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4ETQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ETQ FirstGlance]. <br> |
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SCN:THIOCYANATE+ION'>SCN</scene></td></tr> | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SCN:THIOCYANATE+ION'>SCN</scene></td></tr> | ||
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4ebq|4ebq]], [[4e9o|4e9o]]</td></tr> | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4ebq|4ebq]], [[4e9o|4e9o]]</td></tr> | ||
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">IgG2a, IGHV1S127*01 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10090 | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">IgG2a, IGHV1S127*01 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10090 LK3 transgenic mice]), IgG2a, IGKV4-55*01 germ line ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10090 LK3 transgenic mice]), D8L, VACAC2_124, VACCL3_124, VAC_DPP17_124 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10245 Vaccinia virus])</td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4etq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4etq OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4etq RCSB], [http://www.ebi.ac.uk/pdbsum/4etq PDBsum]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4etq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4etq OCA], [http://pdbe.org/4etq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4etq RCSB], [http://www.ebi.ac.uk/pdbsum/4etq PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4etq ProSAT]</span></td></tr> |
</table> | </table> | ||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
| Line 16: | Line 17: | ||
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
</div> | </div> | ||
| + | <div class="pdbe-citations 4etq" style="background-color:#fffaf0;"></div> | ||
==See Also== | ==See Also== | ||
| - | *[[ | + | *[[3D structures of monoclonal antibody|3D structures of monoclonal antibody]] |
== References == | == References == | ||
<references/> | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| - | [[Category: | + | [[Category: Lk3 transgenic mice]] |
[[Category: Vaccinia virus]] | [[Category: Vaccinia virus]] | ||
[[Category: Matho, M H]] | [[Category: Matho, M H]] | ||
Revision as of 11:24, 11 August 2016
Vaccinia virus D8L IMV envelope protein in complex with Fab of murine IgG2a LA5
| |||||||||||
Categories: Lk3 transgenic mice | Vaccinia virus | Matho, M H | Zajonc, D M | Beta sheet | Carbonic anhydrase fold | Cdr | Chondroitin-sulfate binding site | Constant domain | Delta 262 | Hypervariable region | Igg domain | Igg2a | Immune system-viral protein complex | Loose knot | Neutralizing antibody | Variable domain
