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2yvl
From Proteopedia
(Difference between revisions)
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==Crystal structure of tRNA (m1A58) methyltransferase TrmI from Aquifex aeolicus== | ==Crystal structure of tRNA (m1A58) methyltransferase TrmI from Aquifex aeolicus== | ||
<StructureSection load='2yvl' size='340' side='right' caption='[[2yvl]], [[Resolution|resolution]] 2.20Å' scene=''> | <StructureSection load='2yvl' size='340' side='right' caption='[[2yvl]], [[Resolution|resolution]] 2.20Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[2yvl]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/ | + | <table><tr><td colspan='2'>[[2yvl]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Aquae Aquae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YVL OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2YVL FirstGlance]. <br> |
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SAM:S-ADENOSYLMETHIONINE'>SAM</scene></td></tr> | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SAM:S-ADENOSYLMETHIONINE'>SAM</scene></td></tr> | ||
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">aq_311 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id= | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">aq_311 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=224324 AQUAE])</td></tr> |
| - | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/ | + | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Transferase Transferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.1.1.217, 2.1.1.218, 2.1.1.219 and 2.1.1.220 2.1.1.217, 2.1.1.218, 2.1.1.219 and 2.1.1.220] </span></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2yvl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yvl OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2yvl RCSB], [http://www.ebi.ac.uk/pdbsum/2yvl PDBsum], [http://www.topsan.org/Proteins/RSGI/2yvl TOPSAN]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2yvl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yvl OCA], [http://pdbe.org/2yvl PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2yvl RCSB], [http://www.ebi.ac.uk/pdbsum/2yvl PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2yvl ProSAT], [http://www.topsan.org/Proteins/RSGI/2yvl TOPSAN]</span></td></tr> |
</table> | </table> | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
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<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
| - | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/ | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2yvl ConSurf]. |
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| - | [[Category: | + | [[Category: Aquae]] |
| + | [[Category: Transferase]] | ||
[[Category: Ishii, R]] | [[Category: Ishii, R]] | ||
[[Category: Structural genomic]] | [[Category: Structural genomic]] | ||
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[[Category: Rsgi]] | [[Category: Rsgi]] | ||
[[Category: S-adenosylmethionine]] | [[Category: S-adenosylmethionine]] | ||
| - | [[Category: Transferase]] | ||
[[Category: Trna]] | [[Category: Trna]] | ||
Revision as of 15:22, 11 August 2016
Crystal structure of tRNA (m1A58) methyltransferase TrmI from Aquifex aeolicus
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