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3u8p

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Revision as of 14:23, 29 March 2017

Cytochrome b562 integral fusion with EGFP

Structural highlights

3u8p is a 3 chain structure with sequence from "bacillus_coli"_migula_1895 "bacillus coli" migula 1895. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Ligands:
NonStd Res:
Related:	256b, 2y0g, 3evp, 2wur
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

[GFP_AEQVI] Energy-transfer acceptor. Its role is to transduce the blue chemiluminescence of the protein aequorin into green fluorescent light by energy transfer. Fluoresces in vivo upon receiving energy from the Ca(2+)-activated photoprotein aequorin.

Publication Abstract from PubMed

The construction of useful functional biomolecular components not currently part of the natural repertoire is central to synthetic biology. A new light-capturing ultra-high-efficiency energy transfer protein scaffold has been constructed by coupling the chromophore centers of two normally unrelated proteins: the autofluorescent protein enhanced green fluorescent protein (EGFP) and the heme-binding electron transfer protein cytochrome b(562) (cyt b(562)). Using a combinatorial domain insertion strategy, a variant was isolated in which resonance energy transfer from the donor EGFP to the acceptor cyt b(562) was close to 100% as evident by virtually full fluorescence quenching on heme binding. The fluorescence signal of the variant was also sensitive to the reactive oxygen species H(2)O(2), with high signal gain observed due to the release of heme. The structure of oxidized holoprotein, determined to 2.75 A resolution, revealed that the two domains were arranged side-by-side in a V-shape conformation, generating an interchromophore distance of approximately 17 A (14 A edge-to-edge). Critical to domain arrangement is the formation of a molecular pivot point between the two domains as a result of different linker sequence lengths at each domain junction and formation of a predominantly polar interdomain interaction surface. The retrospective structural analysis has provided an explanation for the basis of the observed highly efficient energy transfer through chromophore arrangement in the directly evolved protein scaffold and provides an insight into the molecular principles by which to design new proteins with coupled functions.

Structural basis for efficient chromophore communication and energy transfer in a constructed didomain protein scaffold.,Arpino JA, Czapinska H, Piasecka A, Edwards WR, Barker P, Gajda MJ, Bochtler M, Jones DD J Am Chem Soc. 2012 Aug 22;134(33):13632-40. Epub 2012 Aug 9. PMID:22822710^[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

↑ Arpino JA, Czapinska H, Piasecka A, Edwards WR, Barker P, Gajda MJ, Bochtler M, Jones DD. Structural basis for efficient chromophore communication and energy transfer in a constructed didomain protein scaffold. J Am Chem Soc. 2012 Aug 22;134(33):13632-40. Epub 2012 Aug 9. PMID:22822710 doi:10.1021/ja301987h

1 Structural highlights
2 Function
3 Publication Abstract from PubMed
4 See Also
5 References

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3u8p"

@@ Line 1: / Line 1: @@
 ==Cytochrome b562 integral fusion with EGFP==
 <StructureSection load='3u8p' size='340' side='right' caption='[[3u8p]], [[Resolution|resolution]] 2.75&Aring;' scene=''>
@@ Line 6: / Line 7: @@
 <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CRO:{2-[(1R,2R)-1-AMINO-2-HYDROXYPROPYL]-4-(4-HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC+ACID'>CRO</scene></td></tr>
 <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[256b|256b]], [[2y0g|2y0g]], [[3evp|3evp]], [[2wur|2wur]]</td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3u8p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3u8p OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3u8p RCSB], [http://www.ebi.ac.uk/pdbsum/3u8p PDBsum]</span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3u8p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3u8p OCA], [http://pdbe.org/3u8p PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3u8p RCSB], [http://www.ebi.ac.uk/pdbsum/3u8p PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3u8p ProSAT]</span></td></tr>
 </table>
 == Function ==
@@ Line 18: / Line 19: @@
 From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 </div>
+<div class="pdbe-citations 3u8p" style="background-color:#fffaf0;"></div>
 ==See Also==

3u8p

From Proteopedia

Revision as of 14:23, 29 March 2017

Cytochrome b562 integral fusion with EGFP

Structural highlights

Function

Publication Abstract from PubMed

See Also

References

Contents

Proteopedia Page Contributors and Editors (what is this?)

Views

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