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Riboswitch

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Line 18: Line 18:
*Adenine riboswitch
*Adenine riboswitch
-
**[[1y26]], [[4tzx]], [[4tzy]], [[4xnr]] – AR + adenine – ''Vibrio vulnificus''<br />
+
**[[1y26]], [[4tzx]], [[4tzy]], [[4xnr]], [[5swd]], [[5swe]] – VvAR + adenine – ''Vibrio vulnificus''<br />
 +
**[[5e54]] – VvAR <br />
**[[3ivn]] – BsAR (mutant) – ''Bacillus subtilis''<br />
**[[3ivn]] – BsAR (mutant) – ''Bacillus subtilis''<br />
**[[3la5]] - BsAR (mutant) + azacytosine<br />
**[[3la5]] - BsAR (mutant) + azacytosine<br />
Line 53: Line 54:
**[[3iqr]], [[2ydh]], [[2ygh]] - TtSAMR (mutant) + SAM<br />
**[[3iqr]], [[2ydh]], [[2ygh]] - TtSAMR (mutant) + SAM<br />
**[[3iqp]] - TtSAMR<br />
**[[3iqp]] - TtSAMR<br />
 +
**[[5fjc]], [[5fk1]], [[5fk2]], [[5fk3]], [[5fk4]], [[5fk5]], [[5fk6]], [[5fkd]], [[5fke]], [[5fkf]], [[5fkg]], [[5fkh]] - TtSAMR + SAM + GTP<br />
**[[2qwy]], [[3e5c]], [[3e5e]], [[3e5f]], [[3iqn]] - SAMR + SAM – synthetic<br />
**[[2qwy]], [[3e5c]], [[3e5e]], [[3e5f]], [[3iqn]] - SAMR + SAM – synthetic<br />
**[[4kqy]] – BsSAMR + SAM<br />
**[[4kqy]] – BsSAMR + SAM<br />
Line 70: Line 72:
**[[5ddp]] – QR + glutamine – human<br />
**[[5ddp]] – QR + glutamine – human<br />
 +
**[[5ddq]], [[5ddr]] – SeQR + glutamine – ''Synechococcus elongatus''<br />
 +
**[[5ddo]] – SeQR + U1 small nuclear ribonucleoprotein<br />
*FMN riboswitch
*FMN riboswitch
Line 77: Line 81:
**[[3f4g]], [[3f4h]] – FnFMNR + flavin derivative<br />
**[[3f4g]], [[3f4h]] – FnFMNR + flavin derivative<br />
**[[2yif]] - FnFMNR + GTP<br />
**[[2yif]] - FnFMNR + GTP<br />
-
**[[5c45]] - FnFMNR + inhibitor<br />
+
**[[5c45]], [[5kx9]] - FnFMNR + inhibitor<br />
*Pre-queosine riboswitch
*Pre-queosine riboswitch
Line 84: Line 88:
**[[3gca]] – TtQ0R + queosine<br />
**[[3gca]] – TtQ0R + queosine<br />
**[[3q50]], [[3q51]] – TtQ1R aptamer domain + queosine<br />
**[[3q50]], [[3q51]] – TtQ1R aptamer domain + queosine<br />
-
**[[4jf2]] – Q1R + GTP + deaza-aminomethyl guanine – ''Lactobacillus rhamnosus''<br />
+
**[[4jf2]], [[5d5l]] – Q1R + GTP + deaza-aminomethyl guanine – ''Lactobacillus rhamnosus''<br />
**[[4rzd]] – Q1R + GTP + deaza-aminomethyl guanine – ''Faecalibacterium prausnitzii''<br />
**[[4rzd]] – Q1R + GTP + deaza-aminomethyl guanine – ''Faecalibacterium prausnitzii''<br />
Line 90: Line 94:
**[[3irw]], [[3mxh]] – VcGMPR + C-di-GMP + GTP + U1 small nuclear ribonucleoprotein – ''Vibrio cholerae''<br />
**[[3irw]], [[3mxh]] – VcGMPR + C-di-GMP + GTP + U1 small nuclear ribonucleoprotein – ''Vibrio cholerae''<br />
-
**[[3iwn]] – VcGMPR + C-di-GMP + U1 small nuclear ribonucleoprotein<br />
+
**[[3iwn]], [[4yb1]] – VcGMPR + C-di-GMP + U1 small nuclear ribonucleoprotein<br />
**[[3mum]], [[3mur]], [[3mut]] - VcGMPR (mutant) + C-di-GMP + U1 small nuclear ribonucleoprotein<br />
**[[3mum]], [[3mur]], [[3mut]] - VcGMPR (mutant) + C-di-GMP + U1 small nuclear ribonucleoprotein<br />
**[[3muv]] - VcGMPR (mutant) + C-di-AMP + U1 small nuclear ribonucleoprotein<br />
**[[3muv]] - VcGMPR (mutant) + C-di-AMP + U1 small nuclear ribonucleoprotein<br />
Line 96: Line 100:
**[[4qk8]], [[4qka]] – GMPR + GTP – ''Thermoanaerobacter pseudethanolicus''<br />
**[[4qk8]], [[4qka]] – GMPR + GTP – ''Thermoanaerobacter pseudethanolicus''<br />
**[[4qk9]] – GMPR + guanosine derivative – ''Thermovirga lienii''<br />
**[[4qk9]] – GMPR + guanosine derivative – ''Thermovirga lienii''<br />
 +
**[[4yaz]], [[4yb0]] – GMPR + C-di-GMP - ''Geobacter''<br />
 +
 +
*C-di-AMP riboswitch
 +
 +
**[[4w90]], [[4w92]] – VBsAMPR + C-di-AMP + U1 small nuclear ribonucleoprotein<br />
*Glycine riboswitch
*Glycine riboswitch
Line 138: Line 147:
**[[4y1j]] – LlYYR (mutant) + Mn<br />
**[[4y1j]] – LlYYR (mutant) + Mn<br />
**[[4y1m]] – EcYYR <br />
**[[4y1m]] – EcYYR <br />
 +
 +
*ykkc riboswitch
 +
 +
**[[5u3g]] – TpR + gusanidine – ''Dikeya dadantii''<br />
*PFI riboswitch
*PFI riboswitch
**[[4znp]] – TpR + AICAR – synthetic<br />
**[[4znp]] – TpR + AICAR – synthetic<br />
 +
 +
*NICO riboswitch
 +
 +
**[[4rum]] – TpR + Co – synthetic<br />
*ZMP riboswitch
*ZMP riboswitch
Line 151: Line 168:
**[[5btp]] – TpR + AICAR – ''Fusobacterium ulcerans'' <br />
**[[5btp]] – TpR + AICAR – ''Fusobacterium ulcerans'' <br />
 +
*Guanidine riboswitch
 +
 +
**[[5t83]] – TpR + guanidine – ''Sulfobacillus acidophilus'' <br />
 +
**[[5ndh]], [[5ndi]], [[5nef]], [[5neo]], [[5nep]], [[5neq]], [[5nex]], [[5nom]] – TpR + guanidine derivative – ''Gloeobacter violaceus'' <br />
 +
**[[5vj9]], [[5vjb]] – TpR + guanidine – ''Pseudomonas aeruginosa'' <br />
}}
}}
== References ==
== References ==
<references/>
<references/>
[[Category: Topic Page]]
[[Category: Topic Page]]

Revision as of 17:26, 29 September 2017

Adenine riboswitch complex with adenine and Mg+2 ions, 1y26

Drag the structure with the mouse to rotate

3D structures of riboswitch

Updated on 29-September-2017

References

  1. ↑ Breaker, Ronald R. (28 March, 2008). Complex Riboswitches. Science, 319(5871), 1795-1797. doi:10.1126/science.1152621
  2. ↑ Serganov A, Yuan YR, Pikovskaya O, Polonskaia A, Malinina L, Phan AT, Hobartner C, Micura R, Breaker RR, Patel DJ. Structural basis for discriminative regulation of gene expression by adenine- and guanine-sensing mRNAs. Chem Biol. 2004 Dec;11(12):1729-41. PMID:15610857 doi:S1074-5521(04)00343-6

Proteopedia Page Contributors and Editors (what is this?)

Michal Harel, Alexander Berchansky, Karsten Theis, Joel L. Sussman

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