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3e7w

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Revision as of 09:04, 25 October 2017

Crystal structure of DLTA: Implications for the reaction mechanism of non-ribosomal peptide synthetase (NRPS) adenylation domains

Structural highlights

3e7w is a 1 chain structure with sequence from "bacillus_globigii"_migula_1900 "bacillus globigii" migula 1900. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Ligands:	,
Related:	1amu, 1md9, 2dls, 1ba3, 1pg4, 1hqb
Gene:	dltA ("Bacillus globigii" Migula 1900)
Activity:	D-alanine--poly(phosphoribitol) ligase, with EC number 6.1.1.13
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

[DLTA_BACSU] Involved in the biosynthesis of D-alanyl-lipoteichoic acid (LTA). Catalyzes an ATP-dependent two-step reaction where it forms a high energy D-alanyl AMP intermediate and transfers the alanyl residues from AMP to Dcp.

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

Publication Abstract from PubMed

DltA, the D-alanine:D-alanyl carrier protein ligase responsible for the initial step of lipoteichoic acid D-alanylation in Gram-positive bacteria, belongs to the adenylation domain superfamily, which also includes acetyl-CoA synthetase and the adenylation domains of non-ribosomal synthetases. The two-step reaction catalyzed by these enzymes (substrate adenylation followed by transfer to the reactive thiol group of CoA or the phosphopantheinyl prosthetic group of peptidyl carrier proteins) has been suggested to proceed via large scale rearrangements of structural domains within the enzyme. The structures of DltA reported here reveal the determinants for D-Ala substrate specificity and confirm that the peptidyl carrier protein-activating domains are able to adopt multiple conformational states, in this case corresponding to the thiolation reaction. Comparisons of available structures allow us to propose a mechanism whereby small perturbations of finely balanced metastable structural states would be able to direct an ordered formation of non-ribosomal synthetase products.

Crystal structure of DltA. Implications for the reaction mechanism of non-ribosomal peptide synthetase adenylation domains.,Yonus H, Neumann P, Zimmermann S, May JJ, Marahiel MA, Stubbs MT J Biol Chem. 2008 Nov 21;283(47):32484-91. Epub 2008 Sep 10. PMID:18784082^[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

↑ Yonus H, Neumann P, Zimmermann S, May JJ, Marahiel MA, Stubbs MT. Crystal structure of DltA. Implications for the reaction mechanism of non-ribosomal peptide synthetase adenylation domains. J Biol Chem. 2008 Nov 21;283(47):32484-91. Epub 2008 Sep 10. PMID:18784082 doi:10.1074/jbc.M800557200

1 Structural highlights
2 Function
3 Evolutionary Conservation
4 Publication Abstract from PubMed
5 References

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3e7w"

@@ Line 1: / Line 1: @@
 ==Crystal structure of DLTA: Implications for the reaction mechanism of non-ribosomal peptide synthetase (NRPS) adenylation domains==
 <StructureSection load='3e7w' size='340' side='right' caption='[[3e7w]], [[Resolution|resolution]] 2.28&Aring;' scene=''>
@@ Line 7: / Line 8: @@
 <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">dltA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 "Bacillus globigii" Migula 1900])</td></tr>
 <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/D-alanine--poly(phosphoribitol)_ligase D-alanine--poly(phosphoribitol) ligase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=6.1.1.13 6.1.1.13] </span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3e7w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3e7w OCA], [http://pdbe.org/3e7w PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3e7w RCSB], [http://www.ebi.ac.uk/pdbsum/3e7w PDBsum]</span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3e7w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3e7w OCA], [http://pdbe.org/3e7w PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3e7w RCSB], [http://www.ebi.ac.uk/pdbsum/3e7w PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3e7w ProSAT]</span></td></tr>
 </table>
 == Function ==
@@ Line 43: / Line 44: @@
 [[Category: Adenylation domain]]
 [[Category: Amp]]
+[[Category: Cytoplasm]]
 [[Category: D-alanine-dalanyl]]
 [[Category: D-alanylation]]

3e7w

From Proteopedia

Revision as of 09:04, 25 October 2017

Crystal structure of DLTA: Implications for the reaction mechanism of non-ribosomal peptide synthetase (NRPS) adenylation domains

Structural highlights

Function

Evolutionary Conservation

Publication Abstract from PubMed

References

Contents

Proteopedia Page Contributors and Editors (what is this?)

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