This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3k4i

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: {{Seed}} 200px <!-- The line below this paragraph, containing "STRUCTURE_3k4i", creates the "Structure Box" on the page. You may change the PDB parameter (which se...)
Current revision (08:25, 1 November 2017) (edit) (undo)
 
(5 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3k4i.jpg|left|200px]]
 
-
<!--
+
==CRYSTAL STRUCTURE OF uncharacterized protein PSPTO_3204 from Pseudomonas syringae pv. tomato str. DC3000==
-
The line below this paragraph, containing "STRUCTURE_3k4i", creates the "Structure Box" on the page.
+
<StructureSection load='3k4i' size='340' side='right' caption='[[3k4i]], [[Resolution|resolution]] 1.69&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3k4i]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseub Pseub]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3K4I OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3K4I FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-
-->
+
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
{{STRUCTURE_3k4i| PDB=3k4i | SCENE= }}
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">AAO56687.1, PSPTO3204 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=323 PSEUB])</td></tr>
-
 
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3k4i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3k4i OCA], [http://pdbe.org/3k4i PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3k4i RCSB], [http://www.ebi.ac.uk/pdbsum/3k4i PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3k4i ProSAT]</span></td></tr>
-
===CRYSTAL STRUCTURE OF uncharacterized protein PSPTO_3204 from Pseudomonas syringae pv. tomato str. DC3000===
+
</table>
-
 
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
==About this Structure==
+
Check<jmol>
-
3K4I is a 3 chains structure of sequences from [http://en.wikipedia.org/wiki/Pseudomonas_syringae_pv._tomato Pseudomonas syringae pv. tomato]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3K4I OCA].
+
<jmolCheckbox>
-
[[Category: Pseudomonas syringae pv. tomato]]
+
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/k4/3k4i_consurf.spt"</scriptWhenChecked>
-
[[Category: Almo, S C.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Burley, S K.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Malashkevich, V N.]]
+
</jmolCheckbox>
-
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3k4i ConSurf].
-
[[Category: Sauder, M J.]]
+
<div style="clear:both"></div>
-
[[Category: Toro, R.]]
+
__TOC__
-
[[Category: Crystal structure]]
+
</StructureSection>
-
[[Category: New york sgx research center for structural genomic]]
+
[[Category: Pseub]]
-
[[Category: New york structural genomix research consortium]]
+
[[Category: Almo, S C]]
-
[[Category: Nysgxrc]]
+
[[Category: Burley, S K]]
-
[[Category: Protein structure initiative]]
+
[[Category: Malashkevich, V N]]
-
[[Category: Psi-2]]
+
[[Category: Structural genomic]]
[[Category: Structural genomic]]
 +
[[Category: Sauder, J M]]
 +
[[Category: Toro, R]]
 +
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]
 +
[[Category: PSI, Protein structure initiative]]
[[Category: Unknown function]]
[[Category: Unknown function]]
- 
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Oct 14 10:41:16 2009''
 

Current revision

CRYSTAL STRUCTURE OF uncharacterized protein PSPTO_3204 from Pseudomonas syringae pv. tomato str. DC3000

3k4i, resolution 1.69Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3k4i"
Personal tools