This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
3kfv
From Proteopedia
(Difference between revisions)
m (Protected "3kfv" [edit=sysop:move=sysop]) |
|||
| (2 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | {{STRUCTURE_3kfv| PDB=3kfv | SCENE= }} | ||
| - | ===Crystal structure of the SH3-kinase fragment of tight junction protein 3 (TJP3) in apo-form=== | ||
| - | == | + | ==Crystal structure of the SH3-kinase fragment of tight junction protein 3 (TJP3) in apo-form== |
| - | [[3kfv]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/ | + | <StructureSection load='3kfv' size='340' side='right' caption='[[3kfv]], [[Resolution|resolution]] 2.80Å' scene=''> |
| - | [[Category: | + | == Structural highlights == |
| - | [[Category: Arrowsmith, C H | + | <table><tr><td colspan='2'>[[3kfv]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KFV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3KFV FirstGlance]. <br> |
| - | [[Category: Bochkarev, A | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=UNX:UNKNOWN+ATOM+OR+ION'>UNX</scene></td></tr> |
| - | [[Category: Bountra, C | + | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> |
| - | [[Category: Edwards, A M | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">TJP3, ZO3 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr> |
| - | [[Category: Guan, X | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3kfv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3kfv OCA], [http://pdbe.org/3kfv PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3kfv RCSB], [http://www.ebi.ac.uk/pdbsum/3kfv PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3kfv ProSAT]</span></td></tr> |
| - | [[Category: Nedyalkova, L | + | </table> |
| - | [[Category: Park, H | + | == Evolutionary Conservation == |
| - | [[Category: | + | [[Image:Consurf_key_small.gif|200px|right]] |
| - | [[Category: Tempel, W | + | Check<jmol> |
| - | [[Category: Tong, Y | + | <jmolCheckbox> |
| - | [[Category: Weigelt, J | + | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kf/3kfv_consurf.spt"</scriptWhenChecked> |
| - | [[Category: Zhong, N | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> |
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3kfv ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Human]] | ||
| + | [[Category: Arrowsmith, C H]] | ||
| + | [[Category: Bochkarev, A]] | ||
| + | [[Category: Bountra, C]] | ||
| + | [[Category: Edwards, A M]] | ||
| + | [[Category: Guan, X]] | ||
| + | [[Category: Nedyalkova, L]] | ||
| + | [[Category: Park, H]] | ||
| + | [[Category: Structural genomic]] | ||
| + | [[Category: Tempel, W]] | ||
| + | [[Category: Tong, Y]] | ||
| + | [[Category: Weigelt, J]] | ||
| + | [[Category: Zhong, N]] | ||
[[Category: Cell adhesion]] | [[Category: Cell adhesion]] | ||
[[Category: Cell junction]] | [[Category: Cell junction]] | ||
| Line 23: | Line 40: | ||
[[Category: Sgc]] | [[Category: Sgc]] | ||
[[Category: Sh3 domain]] | [[Category: Sh3 domain]] | ||
| - | [[Category: Structural genomics consortium]] | ||
[[Category: Tight junction]] | [[Category: Tight junction]] | ||
Current revision
Crystal structure of the SH3-kinase fragment of tight junction protein 3 (TJP3) in apo-form
| |||||||||||
Categories: Human | Arrowsmith, C H | Bochkarev, A | Bountra, C | Edwards, A M | Guan, X | Nedyalkova, L | Park, H | Structural genomic | Tempel, W | Tong, Y | Weigelt, J | Zhong, N | Cell adhesion | Cell junction | Cell membrane | Membrane | Sgc | Sh3 domain | Tight junction
