This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3ktf

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:41, 1 November 2017) (edit) (undo)
 
(4 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3ktf.jpg|left|200px]]
 
-
<!--
+
==Structure of the N-terminal BRCT domain of human microcephalin (MCPH1).==
-
The line below this paragraph, containing "STRUCTURE_3ktf", creates the "Structure Box" on the page.
+
<StructureSection load='3ktf' size='340' side='right' caption='[[3ktf]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3ktf]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KTF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3KTF FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr>
-
-->
+
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
{{STRUCTURE_3ktf| PDB=3ktf | SCENE= }}
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">MCPH1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
-
 
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ktf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ktf OCA], [http://pdbe.org/3ktf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3ktf RCSB], [http://www.ebi.ac.uk/pdbsum/3ktf PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3ktf ProSAT]</span></td></tr>
-
===Structure of the N-terminal BRCT domain of human microcephalin (MCPH1).===
+
</table>
-
 
+
== Disease ==
-
 
+
[[http://www.uniprot.org/uniprot/MCPH1_HUMAN MCPH1_HUMAN]] Premature chromosome condensation with microcephaly and intellectual deficit;Autosomal recessive primary microcephaly. Defects in MCPH1 are the cause of microcephaly primary type 1 (MCPH1) [MIM:[http://omim.org/entry/251200 251200]]; also known as true microcephaly or microcephaly vera. Microcephaly is defined as a head circumference more than 3 standard deviations below the age-related mean. Brain weight is markedly reduced and the cerebral cortex is disproportionately small. Despite this marked reduction in size, the gyral pattern is relatively well preserved, with no major abnormality in cortical architecture. Primary microcephaly is further defined by the absence of other syndromic features or significant neurological deficits. This entity is inherited as autosomal recessive trait.<ref>PMID:12046007</ref> <ref>PMID:15199523</ref> <ref>PMID:16211557</ref>
-
==Disease==
+
== Function ==
-
Known disease associated with this structure: Microcephaly, autosomal recessive 1 OMIM:[[http://www.ncbi.nlm.nih.gov/entrez/dispomim.cgi?id=607117 607117]], Premature chromosome condensation with microcephaly and mental retardation OMIM:[[http://www.ncbi.nlm.nih.gov/entrez/dispomim.cgi?id=607117 607117]]
+
[[http://www.uniprot.org/uniprot/MCPH1_HUMAN MCPH1_HUMAN]] Implicated in chromosome condensation and DNA damage induced cellular responses. May play a role in neurogenesis and regulation of the size of the cerebral cortex.<ref>PMID:12046007</ref> <ref>PMID:15199523</ref> <ref>PMID:15220350</ref>
-
 
+
== Evolutionary Conservation ==
-
==About this Structure==
+
[[Image:Consurf_key_small.gif|200px|right]]
-
3KTF is a 3 chains structure of sequences from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KTF OCA].
+
Check<jmol>
-
[[Category: Homo sapiens]]
+
<jmolCheckbox>
-
[[Category: Heroux, A.]]
+
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kt/3ktf_consurf.spt"</scriptWhenChecked>
-
[[Category: Mer, G.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Singh, N.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Thompson, J R.]]
+
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3ktf ConSurf].
 +
<div style="clear:both"></div>
 +
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Human]]
 +
[[Category: Heroux, A]]
 +
[[Category: Mer, G]]
 +
[[Category: Singh, N]]
 +
[[Category: Thompson, J R]]
[[Category: Brct domain]]
[[Category: Brct domain]]
 +
[[Category: Cell cycle]]
[[Category: Cytoplasm]]
[[Category: Cytoplasm]]
[[Category: Cytoskeleton]]
[[Category: Cytoskeleton]]
Line 33: Line 43:
[[Category: Polymorphism]]
[[Category: Polymorphism]]
[[Category: Primary microcephaly]]
[[Category: Primary microcephaly]]
- 
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Dec 16 14:34:29 2009''
 

Current revision

Structure of the N-terminal BRCT domain of human microcephalin (MCPH1).

3ktf, resolution 1.60Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools