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3lk7
From Proteopedia
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| - | {{STRUCTURE_3lk7| PDB=3lk7 | SCENE= }} | ||
| - | ===The Crystal Structure of UDP-N-acetylmuramoylalanine-D-glutamate (MurD) ligase from Streptococcus agalactiae to 1.5A=== | ||
| - | == | + | ==The Crystal Structure of UDP-N-acetylmuramoylalanine-D-glutamate (MurD) ligase from Streptococcus agalactiae to 1.5A== |
| - | [[3lk7]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/ | + | <StructureSection load='3lk7' size='340' side='right' caption='[[3lk7]], [[Resolution|resolution]] 1.50Å' scene=''> |
| - | [[ | + | == Structural highlights == |
| + | <table><tr><td colspan='2'>[[3lk7]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptococcus_agalactiae_(serotype_v) Streptococcus agalactiae (serotype v)]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LK7 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3LK7 FirstGlance]. <br> | ||
| + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> | ||
| + | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | ||
| + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">murD, SAG0475 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=216466 Streptococcus agalactiae (serotype V)])</td></tr> | ||
| + | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/UDP-N-acetylmuramoyl-L-alanine--D-glutamate_ligase UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=6.3.2.9 6.3.2.9] </span></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3lk7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3lk7 OCA], [http://pdbe.org/3lk7 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3lk7 RCSB], [http://www.ebi.ac.uk/pdbsum/3lk7 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3lk7 ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | == Function == | ||
| + | [[http://www.uniprot.org/uniprot/MURD_STRA5 MURD_STRA5]] Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA) (By similarity). | ||
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/lk/3lk7_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3lk7 ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
[[Category: UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase]] | [[Category: UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase]] | ||
| - | [[Category: Joachimiak, A | + | [[Category: Joachimiak, A]] |
| - | [[Category: | + | [[Category: Structural genomic]] |
| - | [[Category: Sather, A | + | [[Category: Sather, A]] |
| - | [[Category: Shakelford, G | + | [[Category: Shakelford, G]] |
| - | [[Category: Stein, A J | + | [[Category: Stein, A J]] |
[[Category: Agalacitae]] | [[Category: Agalacitae]] | ||
[[Category: Atp-binding]] | [[Category: Atp-binding]] | ||
| Line 17: | Line 36: | ||
[[Category: Cell shape]] | [[Category: Cell shape]] | ||
[[Category: Cell wall biogenesis/degradation]] | [[Category: Cell wall biogenesis/degradation]] | ||
| + | [[Category: Cytoplasm]] | ||
[[Category: D-glutamate]] | [[Category: D-glutamate]] | ||
[[Category: Ligase]] | [[Category: Ligase]] | ||
[[Category: Mcsg]] | [[Category: Mcsg]] | ||
| - | [[Category: Midwest center for structural genomic]] | ||
[[Category: Nucleotide-binding]] | [[Category: Nucleotide-binding]] | ||
[[Category: Peptidoglycan synthesis]] | [[Category: Peptidoglycan synthesis]] | ||
| - | [[Category: Protein structure initiative | + | [[Category: PSI, Protein structure initiative]] |
| - | + | ||
[[Category: Streptococcus]] | [[Category: Streptococcus]] | ||
| - | [[Category: Structural genomic]] | ||
[[Category: Udp-n-acetylmuramoylalanine]] | [[Category: Udp-n-acetylmuramoylalanine]] | ||
Current revision
The Crystal Structure of UDP-N-acetylmuramoylalanine-D-glutamate (MurD) ligase from Streptococcus agalactiae to 1.5A
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Categories: UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase | Joachimiak, A | Structural genomic | Sather, A | Shakelford, G | Stein, A J | Agalacitae | Atp-binding | Cell cycle | Cell division | Cell shape | Cell wall biogenesis/degradation | Cytoplasm | D-glutamate | Ligase | Mcsg | Nucleotide-binding | Peptidoglycan synthesis | PSI, Protein structure initiative | Streptococcus | Udp-n-acetylmuramoylalanine
