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3lyd

From Proteopedia

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(New page: {{Seed}} 200px <!-- The line below this paragraph, containing "STRUCTURE_3lyd", creates the "Structure Box" on the page. You may change the PDB parameter (which se...)
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[[Image:3lyd.jpg|left|200px]]
 
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==Crystal structure of Putative uncharacterized protein from Jonesia denitrificans==
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The line below this paragraph, containing "STRUCTURE_3lyd", creates the "Structure Box" on the page.
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<StructureSection load='3lyd' size='340' side='right' caption='[[3lyd]], [[Resolution|resolution]] 1.45&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[3lyd]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Jondd Jondd]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LYD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3LYD FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
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<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
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{{STRUCTURE_3lyd| PDB=3lyd | SCENE= }}
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Jden_0139 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=471856 JONDD])</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3lyd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3lyd OCA], [http://pdbe.org/3lyd PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3lyd RCSB], [http://www.ebi.ac.uk/pdbsum/3lyd PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3lyd ProSAT]</span></td></tr>
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===Crystal structure of Putative uncharacterized protein from Jonesia denitrificans===
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</table>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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==About this Structure==
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Check<jmol>
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3LYD is a 2 chains structure with sequences from [http://en.wikipedia.org/wiki/Jonesia_denitrificans Jonesia denitrificans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LYD OCA].
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<jmolCheckbox>
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[[Category: Jonesia denitrificans]]
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<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ly/3lyd_consurf.spt"</scriptWhenChecked>
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[[Category: Bearden, J.]]
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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[[Category: Chang, C.]]
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<text>to colour the structure by Evolutionary Conservation</text>
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[[Category: Eisen, J.]]
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</jmolCheckbox>
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[[Category: Joachimiak, A.]]
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3lyd ConSurf].
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[[Category: Kerfeld, C.]]
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<div style="clear:both"></div>
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[[Category: MCSG, Midwest Center for Structural Genomics.]]
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__TOC__
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[[Category: Volkart, L.]]
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</StructureSection>
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[[Category: Wu, D.]]
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[[Category: Jondd]]
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[[Category: Bearden, J]]
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[[Category: Chang, C]]
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[[Category: Eisen, J]]
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[[Category: Joachimiak, A]]
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[[Category: Kerfeld, C]]
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[[Category: Structural genomic]]
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[[Category: Volkart, L]]
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[[Category: Wu, D]]
[[Category: Geba]]
[[Category: Geba]]
[[Category: Genomic encyclopaedia of bacteria and archaea]]
[[Category: Genomic encyclopaedia of bacteria and archaea]]
[[Category: Jonesia denitrifican]]
[[Category: Jonesia denitrifican]]
[[Category: Mcsg]]
[[Category: Mcsg]]
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[[Category: Midwest center for structural genomic]]
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[[Category: PSI, Protein structure initiative]]
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[[Category: Protein structure initiative]]
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[[Category: Psi-2]]
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[[Category: Structural genomic]]
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[[Category: Unknown function]]
[[Category: Unknown function]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 10 14:57:30 2010''
 

Current revision

Crystal structure of Putative uncharacterized protein from Jonesia denitrificans

3lyd, resolution 1.45Å

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