This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
3lyd
From Proteopedia
(Difference between revisions)
| (3 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | {{STRUCTURE_3lyd| PDB=3lyd | SCENE= }} | ||
| - | ===Crystal structure of Putative uncharacterized protein from Jonesia denitrificans=== | ||
| - | == | + | ==Crystal structure of Putative uncharacterized protein from Jonesia denitrificans== |
| - | [[3lyd]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/ | + | <StructureSection load='3lyd' size='340' side='right' caption='[[3lyd]], [[Resolution|resolution]] 1.45Å' scene=''> |
| - | [[Category: | + | == Structural highlights == |
| - | [[Category: Bearden, J | + | <table><tr><td colspan='2'>[[3lyd]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Jondd Jondd]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LYD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3LYD FirstGlance]. <br> |
| - | [[Category: Chang, C | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr> |
| - | [[Category: Eisen, J | + | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> |
| - | [[Category: Joachimiak, A | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Jden_0139 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=471856 JONDD])</td></tr> |
| - | [[Category: Kerfeld, C | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3lyd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3lyd OCA], [http://pdbe.org/3lyd PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3lyd RCSB], [http://www.ebi.ac.uk/pdbsum/3lyd PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3lyd ProSAT]</span></td></tr> |
| - | [[Category: | + | </table> |
| - | [[Category: Volkart, L | + | == Evolutionary Conservation == |
| - | [[Category: Wu, D | + | [[Image:Consurf_key_small.gif|200px|right]] |
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ly/3lyd_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3lyd ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Jondd]] | ||
| + | [[Category: Bearden, J]] | ||
| + | [[Category: Chang, C]] | ||
| + | [[Category: Eisen, J]] | ||
| + | [[Category: Joachimiak, A]] | ||
| + | [[Category: Kerfeld, C]] | ||
| + | [[Category: Structural genomic]] | ||
| + | [[Category: Volkart, L]] | ||
| + | [[Category: Wu, D]] | ||
[[Category: Geba]] | [[Category: Geba]] | ||
[[Category: Genomic encyclopaedia of bacteria and archaea]] | [[Category: Genomic encyclopaedia of bacteria and archaea]] | ||
[[Category: Jonesia denitrifican]] | [[Category: Jonesia denitrifican]] | ||
[[Category: Mcsg]] | [[Category: Mcsg]] | ||
| - | [[Category: | + | [[Category: PSI, Protein structure initiative]] |
| - | + | ||
| - | + | ||
| - | + | ||
[[Category: Unknown function]] | [[Category: Unknown function]] | ||
Current revision
Crystal structure of Putative uncharacterized protein from Jonesia denitrificans
| |||||||||||
