This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
3n4f
From Proteopedia
(Difference between revisions)
| (5 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | {{Seed}} | ||
| - | [[Image:3n4f.jpg|left|200px]] | ||
| - | + | ==CRYSTAL STRUCTURE OF Mandelate racemase/muconate lactonizing protein from Geobacillus sp. Y412MC10== | |
| - | + | <StructureSection load='3n4f' size='340' side='right' caption='[[3n4f]], [[Resolution|resolution]] 1.88Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[3n4f]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Geos4 Geos4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3N4F OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3N4F FirstGlance]. <br> | |
| - | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr> | |
| - | + | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | |
| - | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">192811615, GYMC10_3367 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=481743 GEOS4])</td></tr> | |
| - | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3n4f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3n4f OCA], [http://pdbe.org/3n4f PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3n4f RCSB], [http://www.ebi.ac.uk/pdbsum/3n4f PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3n4f ProSAT]</span></td></tr> | |
| - | + | </table> | |
| - | + | == Evolutionary Conservation == | |
| - | + | [[Image:Consurf_key_small.gif|200px|right]] | |
| - | == | + | Check<jmol> |
| - | + | <jmolCheckbox> | |
| - | [[ | + | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/n4/3n4f_consurf.spt"</scriptWhenChecked> |
| - | [[Category: Almo, S C | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> |
| - | [[Category: Burley, S K | + | <text>to colour the structure by Evolutionary Conservation</text> |
| - | [[Category: Malashkevich, V N | + | </jmolCheckbox> |
| - | [[Category: | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3n4f ConSurf]. |
| - | [[Category: Sauder, J M | + | <div style="clear:both"></div> |
| - | [[Category: Toro, R | + | __TOC__ |
| - | + | </StructureSection> | |
| + | [[Category: Geos4]] | ||
| + | [[Category: Almo, S C]] | ||
| + | [[Category: Burley, S K]] | ||
| + | [[Category: Malashkevich, V N]] | ||
| + | [[Category: Structural genomic]] | ||
| + | [[Category: Sauder, J M]] | ||
| + | [[Category: Toro, R]] | ||
[[Category: Enolase]] | [[Category: Enolase]] | ||
[[Category: Isomerase]] | [[Category: Isomerase]] | ||
| - | [[Category: New | + | [[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]] |
| - | + | [[Category: PSI, Protein structure initiative]] | |
| - | + | ||
| - | [[Category: Protein structure initiative]] | + | |
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
Current revision
CRYSTAL STRUCTURE OF Mandelate racemase/muconate lactonizing protein from Geobacillus sp. Y412MC10
| |||||||||||
