This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
3n7c
From Proteopedia
(Difference between revisions)
m (Protected "3n7c" [edit=sysop:move=sysop]) |
|||
| (3 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | [[Image:3n7c.png|left|200px]] | ||
| - | + | ==Crystal structure of the RAN binding domain from the nuclear pore complex component NUP2 from Ashbya gossypii== | |
| - | + | <StructureSection load='3n7c' size='340' side='right' caption='[[3n7c]], [[Resolution|resolution]] 2.26Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[3n7c]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Ashbya_gossipii Ashbya gossipii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3N7C OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3N7C FirstGlance]. <br> | |
| - | + | </td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | |
| - | == | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">ABR034W, AGOS_ABR034W, NUP2 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=33169 Ashbya gossipii])</td></tr> |
| - | [[3n7c]] is a 2 chain structure | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3n7c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3n7c OCA], [http://pdbe.org/3n7c PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3n7c RCSB], [http://www.ebi.ac.uk/pdbsum/3n7c PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3n7c ProSAT]</span></td></tr> |
| - | + | </table> | |
| - | == | + | == Evolutionary Conservation == |
| - | + | [[Image:Consurf_key_small.gif|200px|right]] | |
| - | [[Category: | + | Check<jmol> |
| - | [[Category: Atwell, S | + | <jmolCheckbox> |
| - | [[Category: Bain, K | + | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/n7/3n7c_consurf.spt"</scriptWhenChecked> |
| - | [[Category: Burley, S K | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> |
| - | [[Category: Emtage, J S | + | <text>to colour the structure by Evolutionary Conservation</text> |
| - | [[Category: Gheyi, T | + | </jmolCheckbox> |
| - | [[Category: Gilmore, J | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3n7c ConSurf]. |
| - | [[Category: Manglicmot, D | + | <div style="clear:both"></div> |
| - | [[Category: | + | __TOC__ |
| - | [[Category: Sampathkumar, P | + | </StructureSection> |
| - | [[Category: Sauder, J M | + | [[Category: Ashbya gossipii]] |
| - | [[Category: Thompson, D A | + | [[Category: Atwell, S]] |
| - | [[Category: Wasserman, S | + | [[Category: Bain, K]] |
| - | [[Category: New | + | [[Category: Burley, S K]] |
| - | + | [[Category: Emtage, J S]] | |
| + | [[Category: Gheyi, T]] | ||
| + | [[Category: Gilmore, J]] | ||
| + | [[Category: Manglicmot, D]] | ||
| + | [[Category: Structural genomic]] | ||
| + | [[Category: Sampathkumar, P]] | ||
| + | [[Category: Sauder, J M]] | ||
| + | [[Category: Thompson, D A]] | ||
| + | [[Category: Wasserman, S]] | ||
| + | [[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]] | ||
[[Category: Nuclear pore complex]] | [[Category: Nuclear pore complex]] | ||
[[Category: Nucleoporin]] | [[Category: Nucleoporin]] | ||
[[Category: Nup2]] | [[Category: Nup2]] | ||
| - | [[Category: | + | [[Category: PSI, Protein structure initiative]] |
| - | + | ||
[[Category: Protein transport]] | [[Category: Protein transport]] | ||
| - | [[Category: Psi-2]] | ||
[[Category: Ran-binding domain]] | [[Category: Ran-binding domain]] | ||
| - | [[Category: Structural genomic]] | ||
Current revision
Crystal structure of the RAN binding domain from the nuclear pore complex component NUP2 from Ashbya gossypii
| |||||||||||
Categories: Ashbya gossipii | Atwell, S | Bain, K | Burley, S K | Emtage, J S | Gheyi, T | Gilmore, J | Manglicmot, D | Structural genomic | Sampathkumar, P | Sauder, J M | Thompson, D A | Wasserman, S | NYSGXRC, New York SGX Research Center for Structural Genomics | Nuclear pore complex | Nucleoporin | Nup2 | PSI, Protein structure initiative | Protein transport | Ran-binding domain
