5kd6

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 3: Line 3:
<StructureSection load='5kd6' size='340' side='right' caption='[[5kd6]], [[Resolution|resolution]] 1.84&Aring;' scene=''>
<StructureSection load='5kd6' size='340' side='right' caption='[[5kd6]], [[Resolution|resolution]] 1.84&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5kd6]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5KD6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5KD6 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5kd6]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Aspte Aspte]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5KD6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5KD6 FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=6C7:S-(3-METHYLBUT-2-EN-1-YL)+TRIHYDROGEN+THIODIPHOSPHATE'>6C7</scene>, <scene name='pdbligand=LBU:METHYL+(2S)-4-HYDROXY-3-(4-HYDROXYPHENYL)-2-[(4-HYDROXYPHENYL)METHYL]-5-OXO-2,5-DIHYDROFURAN-2-CARBOXYLATE'>LBU</scene></td></tr>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=6C7:S-(3-METHYLBUT-2-EN-1-YL)+TRIHYDROGEN+THIODIPHOSPHATE'>6C7</scene>, <scene name='pdbligand=LBU:METHYL+(2S)-4-HYDROXY-3-(4-HYDROXYPHENYL)-2-[(4-HYDROXYPHENYL)METHYL]-5-OXO-2,5-DIHYDROFURAN-2-CARBOXYLATE'>LBU</scene></td></tr>
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5kcg|5kcg]], [[5kcl|5kcl]], [[5kcq|5kcq]], [[5kcy|5kcy]], [[5kd0|5kd0]], [[5kda|5kda]]</td></tr>
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5kcg|5kcg]], [[5kcl|5kcl]], [[5kcq|5kcq]], [[5kcy|5kcy]], [[5kd0|5kd0]], [[5kda|5kda]]</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5kd6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5kd6 OCA], [http://pdbe.org/5kd6 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5kd6 RCSB], [http://www.ebi.ac.uk/pdbsum/5kd6 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5kd6 ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5kd6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5kd6 OCA], [http://pdbe.org/5kd6 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5kd6 RCSB], [http://www.ebi.ac.uk/pdbsum/5kd6 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5kd6 ProSAT]</span></td></tr>
</table>
</table>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Aromatic prenyltransferases (aPTases) transfer prenyl moieties from isoprenoid donors to various aromatic acceptors, some of which have the rare property of extreme enzymatic promiscuity toward both a variety of prenyl donors and a large diversity of acceptors. In this study, we discovered a new aPTase, AtaPT, from Aspergillus terreus that exhibits unprecedented promiscuity toward diverse aromatic acceptors and prenyl donors and also yields products with a range of prenylation patterns. Systematic crystallographic studies revealed various discrete conformations for ligand binding with donor-dependent acceptor specificity and multiple binding sites within a spacious hydrophobic substrate-binding pocket. Further structure-guided mutagenesis of active sites at the substrate-binding pocket is responsible for altering the specificity and promiscuity toward substrates and the diversity of product prenylations. Our study reveals the molecular mechanism underlying the promiscuity of AtaPT and suggests an efficient protein engineering strategy to generate new prenylated derivatives in drug discovery applications.
 +
 +
Molecular insights into the enzyme promiscuity of an aromatic prenyltransferase.,Chen R, Gao B, Liu X, Ruan F, Zhang Y, Lou J, Feng K, Wunsch C, Li SM, Dai J, Sun F Nat Chem Biol. 2017 Feb;13(2):226-234. doi: 10.1038/nchembio.2263. Epub 2016 Dec , 19. PMID:27992881<ref>PMID:27992881</ref>
 +
 +
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 +
</div>
 +
<div class="pdbe-citations 5kd6" style="background-color:#fffaf0;"></div>
 +
== References ==
 +
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
 +
[[Category: Aspte]]
[[Category: Gao, B]]
[[Category: Gao, B]]
[[Category: Sun, F]]
[[Category: Sun, F]]

Revision as of 08:05, 16 November 2017

Crystal structure of the aromatic prenyltransferase AtaPT from Aspergillus terreus A8-4 in complex with dimethylallyl S-thiolodiphosphate and (-)-butyrolactone II

5kd6, resolution 1.84Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools