This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3k28

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (19:22, 24 January 2018) (edit) (undo)
 
(4 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3k28.jpg|left|200px]]
 
-
<!--
+
==Crystal Structure of a glutamate-1-semialdehyde aminotransferase from Bacillus anthracis with bound Pyridoxal 5'Phosphate==
-
The line below this paragraph, containing "STRUCTURE_3k28", creates the "Structure Box" on the page.
+
<StructureSection load='3k28' size='340' side='right' caption='[[3k28]], [[Resolution|resolution]] 1.95&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3k28]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_anthracis_ames_"ancestor" Bacillus anthracis ames "ancestor"]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3K28 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3K28 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene></td></tr>
-
-->
+
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
{{STRUCTURE_3k28| PDB=3k28 | SCENE= }}
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">BAS4358, BA_4693, GBAA_4693, hemL-2, hemL2 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=261594 Bacillus anthracis Ames "Ancestor"])</td></tr>
-
 
+
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Glutamate-1-semialdehyde_2,1-aminomutase Glutamate-1-semialdehyde 2,1-aminomutase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.4.3.8 5.4.3.8] </span></td></tr>
-
===Crystal Structure of a glutamate-1-semialdehyde aminotransferase from Bacillus anthracis with bound Pyridoxal 5'Phosphate===
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3k28 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3k28 OCA], [http://pdbe.org/3k28 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3k28 RCSB], [http://www.ebi.ac.uk/pdbsum/3k28 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3k28 ProSAT]</span></td></tr>
-
 
+
</table>
-
 
+
== Evolutionary Conservation ==
-
==About this Structure==
+
[[Image:Consurf_key_small.gif|200px|right]]
-
3K28 is a 4 chains structure with sequences from [http://en.wikipedia.org/wiki/Bacteria Bacteria]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3K28 OCA].
+
Check<jmol>
-
[[Category: Bacteria]]
+
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/k2/3k28_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3k28 ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Bacillus anthracis ames ancestor]]
[[Category: Glutamate-1-semialdehyde 2,1-aminomutase]]
[[Category: Glutamate-1-semialdehyde 2,1-aminomutase]]
-
[[Category: Anderson, W F.]]
+
[[Category: Anderson, W F]]
-
[[Category: Brunzelle, J S.]]
+
[[Category: Brunzelle, J S]]
-
[[Category: Savchenko, A.]]
+
[[Category: Structural genomic]]
-
[[Category: Sharma, S S.]]
+
[[Category: Savchenko, A]]
-
[[Category: Skarina, T.]]
+
[[Category: Sharma, S S]]
-
[[Category: Wawrzak, Z.]]
+
[[Category: Skarina, T]]
 +
[[Category: Wawrzak, Z]]
[[Category: And carrier]]
[[Category: And carrier]]
[[Category: Biosynthesis of cofactor]]
[[Category: Biosynthesis of cofactor]]
-
[[Category: Center for structural genomics of infectious disease]]
 
[[Category: Csgid]]
[[Category: Csgid]]
[[Category: Cytoplasm]]
[[Category: Cytoplasm]]
Line 35: Line 42:
[[Category: Prosthetic group]]
[[Category: Prosthetic group]]
[[Category: Pyridoxal phosphate]]
[[Category: Pyridoxal phosphate]]
-
[[Category: Structural genomic]]
+
[[Category: Transferase]]
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan 20 15:54:30 2010''
+

Current revision

Crystal Structure of a glutamate-1-semialdehyde aminotransferase from Bacillus anthracis with bound Pyridoxal 5'Phosphate

3k28, resolution 1.95Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools