This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3kd3

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "3kd3" [edit=sysop:move=sysop])
Current revision (19:23, 24 January 2018) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
-
{{STRUCTURE_3kd3| PDB=3kd3 | SCENE= }}
 
-
===Crystal structure of a phosphoserine phosphohydrolase-like protein from Francisella tularensis subsp. tularensis SCHU S4===
 
-
==About this Structure==
+
==Crystal structure of a phosphoserine phosphohydrolase-like protein from Francisella tularensis subsp. tularensis SCHU S4==
-
[[3kd3]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Francisella_tularensis_subsp._tularensis Francisella tularensis subsp. tularensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KD3 OCA].
+
<StructureSection load='3kd3' size='340' side='right' caption='[[3kd3]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
-
[[Category: Francisella tularensis subsp. tularensis]]
+
== Structural highlights ==
-
[[Category: Anderson, W.]]
+
<table><tr><td colspan='2'>[[3kd3]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"francisella_tularensis_subsp._nearctica"_olsufjev_1970 "francisella tularensis subsp. nearctica" olsufjev 1970]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KD3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3KD3 FirstGlance]. <br>
-
[[Category: Joachimiak, A.]]
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-
[[Category: Nocek, B.]]
+
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
[[Category: Peterson, S.]]
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">FTT0568, FTT_0568 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=119856 "Francisella tularensis subsp. nearctica" Olsufjev 1970])</td></tr>
-
[[Category: Zhou, M.]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3kd3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3kd3 OCA], [http://pdbe.org/3kd3 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3kd3 RCSB], [http://www.ebi.ac.uk/pdbsum/3kd3 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3kd3 ProSAT]</span></td></tr>
-
[[Category: Center for structural genomics of infectious disease]]
+
</table>
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kd/3kd3_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3kd3 ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Francisella tularensis subsp. nearctica olsufjev 1970]]
 +
[[Category: Anderson, W]]
 +
[[Category: CSGID]]
 +
[[Category: Structural genomic]]
 +
[[Category: Joachimiak, A]]
 +
[[Category: Nocek, B]]
 +
[[Category: Peterson, S]]
 +
[[Category: Zhou, M]]
[[Category: Csgid]]
[[Category: Csgid]]
-
[[Category: Niaid]]
 
[[Category: Phosphoserine phosphohydrolase-like protein]]
[[Category: Phosphoserine phosphohydrolase-like protein]]
-
[[Category: Structural genomic]]
 
[[Category: Unknown function]]
[[Category: Unknown function]]

Current revision

Crystal structure of a phosphoserine phosphohydrolase-like protein from Francisella tularensis subsp. tularensis SCHU S4

3kd3, resolution 1.70Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools