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Jmol/Visualizing membrane position
From Proteopedia
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In the case of 5LiL, I had difficulty getting the pseudoatoms to show from a green link (even though they displayed in the [[SAT]]). In the PDB file, the pseudoatoms followed a MASTER record. I deleted the MASTER record and all CONECT records, and then I got the results shown above with [[Image:5lil_opm2.pdb]]. | In the case of 5LiL, I had difficulty getting the pseudoatoms to show from a green link (even though they displayed in the [[SAT]]). In the PDB file, the pseudoatoms followed a MASTER record. I deleted the MASTER record and all CONECT records, and then I got the results shown above with [[Image:5lil_opm2.pdb]]. | ||
| + | * [http://FirstGlance.Jmol.Org/fg.htm?mol=http%3A//proteopedia.org/wiki/images/d/da/5lil_opm2.pdb View 5lil_opm.pdb in FirstGlance in Jmol] | ||
</StructureSection> | </StructureSection> | ||
== References == | == References == | ||
<references/> | <references/> | ||
Revision as of 19:17, 30 March 2018
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References
- ↑ 1.0 1.1 Lomize MA, Pogozheva ID, Joo H, Mosberg HI, Lomize AL. OPM database and PPM web server: resources for positioning of proteins in membranes. Nucleic Acids Res. 2012 Jan;40(Database issue):D370-6. doi: 10.1093/nar/gkr703., Epub 2011 Sep 2. PMID:21890895 doi:http://dx.doi.org/10.1093/nar/gkr703
