2hpy
From Proteopedia
| Line 4: | Line 4: | ||
|PDB= 2hpy |SIZE=350|CAPTION= <scene name='initialview01'>2hpy</scene>, resolution 2.8Å | |PDB= 2hpy |SIZE=350|CAPTION= <scene name='initialview01'>2hpy</scene>, resolution 2.8Å | ||
|SITE= | |SITE= | ||
| - | |LIGAND= <scene name='pdbligand=HG:MERCURY+(II)+ION'>HG</scene>, <scene name='pdbligand= | + | |LIGAND= <scene name='pdbligand=ACE:ACETYL+GROUP'>ACE</scene>, <scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=HG:MERCURY+(II)+ION'>HG</scene>, <scene name='pdbligand=HTG:HEPTYL+1-THIOHEXOPYRANOSIDE'>HTG</scene>, <scene name='pdbligand=HTO:HEPTANE-1,2,3-TRIOL'>HTO</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=PLM:PALMITIC+ACID'>PLM</scene>, <scene name='pdbligand=RET:RETINAL'>RET</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene> |
|ACTIVITY= | |ACTIVITY= | ||
|GENE= | |GENE= | ||
| + | |DOMAIN= | ||
| + | |RELATEDENTRY=[[1u19|1U19]], [[2g87|2G87]] | ||
| + | |RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2hpy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2hpy OCA], [http://www.ebi.ac.uk/pdbsum/2hpy PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2hpy RCSB]</span> | ||
}} | }} | ||
| Line 24: | Line 27: | ||
[[Category: Nakamichi, H.]] | [[Category: Nakamichi, H.]] | ||
[[Category: Okada, T.]] | [[Category: Okada, T.]] | ||
| - | [[Category: ACE]] | ||
| - | [[Category: HG]] | ||
| - | [[Category: HTG]] | ||
| - | [[Category: HTO]] | ||
| - | [[Category: PLM]] | ||
| - | [[Category: RET]] | ||
| - | [[Category: ZN]] | ||
[[Category: g protein-coupled receptor]] | [[Category: g protein-coupled receptor]] | ||
[[Category: visual pigment]] | [[Category: visual pigment]] | ||
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 03:33:43 2008'' |
Revision as of 00:33, 31 March 2008
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| , resolution 2.8Å | |||||||
|---|---|---|---|---|---|---|---|
| Ligands: | , , , , , , , , , | ||||||
| Related: | 1U19, 2G87
| ||||||
| Resources: | FirstGlance, OCA, PDBsum, RCSB | ||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
Crystallographic model of lumirhodopsin
Overview
Photoactivation of the visual rhodopsin, a prototypical G protein-coupled receptor (GPCR), involves efficient conversion of the intrinsic inverse-agonist 11-cis-retinal to the all-trans agonist. This event leads to the rearrangement of the heptahelical transmembrane bundle, which is thought to be shared by hundreds of GPCRs. To examine this activation mechanism, we determined the x-ray crystallographic model of the photoreaction intermediate of rhodopsin, lumirhodopsin, which represents the conformational state having the nearly complete all-trans agonist form of the retinal. A difference electron density map clearly indicated that the distorted all-trans-retinal in the precedent intermediate bathorhodopsin relaxes by dislocation of the beta-ionone ring in lumirhodopsin, along with significant peptide displacement in the middle of helix III, including approximately two helical turns. This local movement results in the breaking of the electrostatic interhelical restraints mediated by many of the conserved residues among rhodopsin-like GPCRs, with consequent acquisition of full activity.
About this Structure
2HPY is a Single protein structure of sequence from Bos taurus. Full crystallographic information is available from OCA.
Reference
Local peptide movement in the photoreaction intermediate of rhodopsin., Nakamichi H, Okada T, Proc Natl Acad Sci U S A. 2006 Aug 22;103(34):12729-34. Epub 2006 Aug 14. PMID:16908857
Page seeded by OCA on Mon Mar 31 03:33:43 2008
