5yeq
From Proteopedia
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| - | '''Unreleased structure''' | ||
| - | The | + | ==The structure of Sac-KARI protein== |
| + | <StructureSection load='5yeq' size='340' side='right' caption='[[5yeq]], [[Resolution|resolution]] 1.75Å' scene=''> | ||
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[5yeq]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5YEQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5YEQ FirstGlance]. <br> | ||
| + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> | ||
| + | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | ||
| + | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Ketol-acid_reductoisomerase Ketol-acid reductoisomerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.1.86 1.1.1.86] </span></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5yeq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5yeq OCA], [http://pdbe.org/5yeq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5yeq RCSB], [http://www.ebi.ac.uk/pdbsum/5yeq PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5yeq ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | == Function == | ||
| + | [[http://www.uniprot.org/uniprot/A0A0U3H6N8_9CREN A0A0U3H6N8_9CREN]] Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol-acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3-dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3-hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate.[HAMAP-Rule:MF_00435] | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | Ketol-acid reductoisomerase (KARI) is a bifunctional enzyme in the second step of branched-chain amino acids biosynthetic pathway. Most KARIs prefer NADPH as a cofactor. However, KARI with a preference for NADH is desirable in industrial applications including anaerobic fermentation for the production of branched-chain amino acids or biofuels. Here, we characterize a thermoacidophilic archaeal Sac-KARI from Sulfolobus acidocaldarius and present its crystal structure at a 1.75-A resolution. By comparison with other holo-KARI structures, one sulphate ion is observed in each binding site for the 2'-phosphate of NADPH, implicating its NADPH preference. Sac-KARI has very high affinity for NADPH and NADH, with K M values of 0.4 muM for NADPH and 6.0 muM for NADH, suggesting that both are good cofactors at low concentrations although NADPH is favoured over NADH. Furthermore, Sac-KARI can catalyze 2(S)-acetolactate (2S-AL) with either cofactor from 25 to 60 degrees C, but the enzyme has higher activity by using NADPH. In addition, the catalytic activity of Sac-KARI increases significantly with elevated temperatures and reaches an optimum at 60 degrees C. Bi-cofactor utilization and the thermoactivity of Sac-KARI make it a potential candidate for use in metabolic engineering or industrial applications under anaerobic or harsh conditions. | ||
| - | + | NADH/NADPH bi-cofactor-utilizing and thermoactive ketol-acid reductoisomerase from Sulfolobus acidocaldarius.,Chen CY, Ko TP, Lin KF, Lin BL, Huang CH, Chiang CH, Horng JC Sci Rep. 2018 May 8;8(1):7176. doi: 10.1038/s41598-018-25361-4. PMID:29739976<ref>PMID:29739976</ref> | |
| - | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
| - | [[Category: | + | </div> |
| - | [[Category: | + | <div class="pdbe-citations 5yeq" style="background-color:#fffaf0;"></div> |
| - | [[Category: | + | == References == |
| - | [[Category: Huang, C | + | <references/> |
| - | [[Category: | + | __TOC__ |
| - | [[Category: Lin, | + | </StructureSection> |
| - | [[Category: | + | [[Category: Ketol-acid reductoisomerase]] |
| - | [[Category: Tsai, M | + | [[Category: Chen, C Y]] |
| - | [[Category: | + | [[Category: Chiang, C H]] |
| + | [[Category: Horng, J C]] | ||
| + | [[Category: Huang, C H]] | ||
| + | [[Category: Ko, T P]] | ||
| + | [[Category: Lin, B L]] | ||
| + | [[Category: Lin, K F]] | ||
| + | [[Category: Tsai, M D]] | ||
| + | [[Category: Acid tolerant enzyme]] | ||
| + | [[Category: Ahir]] | ||
| + | [[Category: Bcaa]] | ||
| + | [[Category: Biofuel]] | ||
| + | [[Category: Branched-chain amino acid]] | ||
| + | [[Category: Isomerase]] | ||
| + | [[Category: Knot domain]] | ||
| + | [[Category: Metal ion cofactor]] | ||
| + | [[Category: Nadh]] | ||
| + | [[Category: Nadph]] | ||
| + | [[Category: Reductase]] | ||
Revision as of 07:09, 4 July 2018
The structure of Sac-KARI protein
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Categories: Ketol-acid reductoisomerase | Chen, C Y | Chiang, C H | Horng, J C | Huang, C H | Ko, T P | Lin, B L | Lin, K F | Tsai, M D | Acid tolerant enzyme | Ahir | Bcaa | Biofuel | Branched-chain amino acid | Isomerase | Knot domain | Metal ion cofactor | Nadh | Nadph | Reductase
