This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2iyk

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
-
==CRYSTAL STRUCTURE OF THE UPF2-INTERACTING DOMAIN OF NONSENSE MEDIATED MRNA DECAY FACTOR UPF1==
+
 
 +
==Crystal structure of the UPF2-interacting domain of nonsense mediated mRNA decay factor UPF1==
<StructureSection load='2iyk' size='340' side='right' caption='[[2iyk]], [[Resolution|resolution]] 2.95&Aring;' scene=''>
<StructureSection load='2iyk' size='340' side='right' caption='[[2iyk]], [[Resolution|resolution]] 2.95&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[2iyk]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2IYK OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2IYK FirstGlance]. <br>
<table><tr><td colspan='2'>[[2iyk]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2IYK OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2IYK FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2iyk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2iyk OCA], [http://pdbe.org/2iyk PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2iyk RCSB], [http://www.ebi.ac.uk/pdbsum/2iyk PDBsum]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2iyk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2iyk OCA], [http://pdbe.org/2iyk PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2iyk RCSB], [http://www.ebi.ac.uk/pdbsum/2iyk PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2iyk ProSAT]</span></td></tr>
</table>
</table>
== Evolutionary Conservation ==
== Evolutionary Conservation ==
Line 10: Line 11:
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/iy/2iyk_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/iy/2iyk_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
Line 34: Line 35:
[[Category: Kadlec, J]]
[[Category: Kadlec, J]]
[[Category: Ravelli, R B]]
[[Category: Ravelli, R B]]
 +
[[Category: Alternative splicing]]
[[Category: Atp-binding]]
[[Category: Atp-binding]]
[[Category: Helicase]]
[[Category: Helicase]]
Line 45: Line 47:
[[Category: Surveillance complex]]
[[Category: Surveillance complex]]
[[Category: Upf1]]
[[Category: Upf1]]
 +
[[Category: Zinc]]
[[Category: Zinc-finger]]
[[Category: Zinc-finger]]

Revision as of 06:49, 11 July 2018

Crystal structure of the UPF2-interacting domain of nonsense mediated mRNA decay factor UPF1

2iyk, resolution 2.95Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2iyk"
Personal tools