This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
2qqs
From Proteopedia
(Difference between revisions)
| Line 1: | Line 1: | ||
| + | |||
==JMJD2A tandem tudor domains in complex with a trimethylated histone H4-K20 peptide== | ==JMJD2A tandem tudor domains in complex with a trimethylated histone H4-K20 peptide== | ||
<StructureSection load='2qqs' size='340' side='right' caption='[[2qqs]], [[Resolution|resolution]] 2.82Å' scene=''> | <StructureSection load='2qqs' size='340' side='right' caption='[[2qqs]], [[Resolution|resolution]] 2.82Å' scene=''> | ||
| Line 6: | Line 7: | ||
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2qqr|2qqr]]</td></tr> | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2qqr|2qqr]]</td></tr> | ||
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">JMJD2A, JHDM3A, JMJD2, KIAA0677 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr> | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">JMJD2A, JHDM3A, JMJD2, KIAA0677 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr> | ||
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2qqs FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2qqs OCA], [http://pdbe.org/2qqs PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2qqs RCSB], [http://www.ebi.ac.uk/pdbsum/2qqs PDBsum]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2qqs FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2qqs OCA], [http://pdbe.org/2qqs PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2qqs RCSB], [http://www.ebi.ac.uk/pdbsum/2qqs PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2qqs ProSAT]</span></td></tr> |
</table> | </table> | ||
== Function == | == Function == | ||
| Line 14: | Line 15: | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
| - | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qq/2qqs_consurf.spt"</scriptWhenChecked> | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qq/2qqs_consurf.spt"</scriptWhenChecked> |
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
| - | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/ | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2qqs ConSurf]. |
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
| Line 31: | Line 32: | ||
==See Also== | ==See Also== | ||
| - | *[[Jumonji domain-containing protein | + | *[[Jumonji domain-containing protein|Jumonji domain-containing protein]] |
== References == | == References == | ||
<references/> | <references/> | ||
| Line 50: | Line 51: | ||
[[Category: Oxidoreductase]] | [[Category: Oxidoreductase]] | ||
[[Category: Phosphorylation]] | [[Category: Phosphorylation]] | ||
| + | [[Category: Polymorphism]] | ||
[[Category: Protein-methylated peptide complex]] | [[Category: Protein-methylated peptide complex]] | ||
[[Category: Transcription]] | [[Category: Transcription]] | ||
[[Category: Transcription regulation]] | [[Category: Transcription regulation]] | ||
| + | [[Category: Zinc]] | ||
[[Category: Zinc-finger]] | [[Category: Zinc-finger]] | ||
Revision as of 10:51, 5 September 2018
JMJD2A tandem tudor domains in complex with a trimethylated histone H4-K20 peptide
| |||||||||||
Categories: Human | Botuyan, M V | Lee, J | Mer, G | Chromatin regulator | Dioxygenase | Histone lysine demethylase | Host-virus interaction | Iron | Metal binding protein | Metal-binding | Nucleus | Oxidoreductase | Phosphorylation | Polymorphism | Protein-methylated peptide complex | Transcription | Transcription regulation | Zinc | Zinc-finger
