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Riboswitch
From Proteopedia
(Difference between revisions)
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**[[4kqy]] – BsSAMR + SAM<br /> | **[[4kqy]] – BsSAMR + SAM<br /> | ||
**[[4oqu]] - SAMR + SAM - synthetic<br /> | **[[4oqu]] - SAMR + SAM - synthetic<br /> | ||
| + | **[[6fz0]] - SAMR + SAM - ''Candidatus pelagibacter''<br /> | ||
*S-adenosylhomocysteine riboswitch | *S-adenosylhomocysteine riboswitch | ||
| Line 65: | Line 66: | ||
*Lysine riboswitch | *Lysine riboswitch | ||
| - | **[[3d0u]] – TmKR ligand-binding domain + Lysine – | + | **[[3dis]] – TmKR – ''Thermotoga maritima''<br /> |
| + | **[[3d0u]] – TmKR ligand-binding domain + Lysine <br /> | ||
| + | **[[3dil]], [[3dim]], [[3dio]], [[3dix]], [[3diy]], [[3diz]], [[3dj2]] – TmKR + Lys <br /> | ||
| + | **[[3dj0]], [[3dir]] – TmKR + Lys derivative<br /> | ||
| + | **[[3dig]] – TmKR + Cys derivative<br /> | ||
| + | **[[3diq]] – TmKR + homoArg <br /> | ||
**[[4erj]] – TmKR + aminocaproic acid<br /> | **[[4erj]] – TmKR + aminocaproic acid<br /> | ||
**[[4erl]] – TmKR + Lys + Gly<br /> | **[[4erl]] – TmKR + Lys + Gly<br /> | ||
| + | **[[3d0x]] - KR - synthetic<br /> | ||
*Glutamine riboswitch | *Glutamine riboswitch | ||
| Line 81: | Line 88: | ||
**[[3f4g]], [[3f4h]] – FnFMNR + flavin derivative<br /> | **[[3f4g]], [[3f4h]] – FnFMNR + flavin derivative<br /> | ||
**[[2yif]] - FnFMNR + GTP<br /> | **[[2yif]] - FnFMNR + GTP<br /> | ||
| - | **[[5c45]], [[5kx9]] - FnFMNR + inhibitor<br /> | + | **[[6dn1]], [[6dn2]], [[6dn3]] - FnFMNR + RNA<br /> |
| + | **[[5c45]], [[5kx9]], [[6bfb]] - FnFMNR + inhibitor<br /> | ||
*Pre-queosine riboswitch | *Pre-queosine riboswitch | ||
| Line 105: | Line 113: | ||
**[[4w90]], [[4w92]] – VBsAMPR + C-di-AMP + U1 small nuclear ribonucleoprotein<br /> | **[[4w90]], [[4w92]] – VBsAMPR + C-di-AMP + U1 small nuclear ribonucleoprotein<br /> | ||
| + | **[[3muv]] – AMPR + C-di-AMP + U1 small nuclear ribonucleoprotein - synthetic<br /> | ||
| + | **[[4qk8]] – AMPR + C-di-AMP + GTP - ''Thermoanaerobacter pseudethanolicus''<br /> | ||
| + | **[[4qk8]], [[4qka]] – AMPR + C-di-AMP + GTP - ''Thermoanaerobacter pseudethanolicus''<br /> | ||
| + | **[[4qlm]], [[4qln]] – AMPR + C-di-AMP - ''Thermoanaerobacter tengcongensis''<br /> | ||
| + | **[[4qk9]] – AMPR + C-di-AMP + GTP derivative - ''Thermovirga lienii''<br /> | ||
*Glycine riboswitch | *Glycine riboswitch | ||
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**[[3pdr]] – BsMBR + Mn<br /> | **[[3pdr]] – BsMBR + Mn<br /> | ||
| + | **[[2qbz]] – BsMBR + Mg<br /> | ||
*T-Box riboswitch | *T-Box riboswitch | ||
| Line 151: | Line 165: | ||
**[[5u3g]] – TpR + gusanidine – ''Dikeya dadantii''<br /> | **[[5u3g]] – TpR + gusanidine – ''Dikeya dadantii''<br /> | ||
| + | |||
| + | *PRPP riboswitch | ||
| + | |||
| + | **[[6ck5]] – TmPRR + PRPP – ''Thermoanaerobacter mathranii''<br /> | ||
| + | **[[6ck4]] – TmPRR + ppGpp<br /> | ||
*PFI riboswitch | *PFI riboswitch | ||
Revision as of 19:21, 14 September 2018
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3D structures of riboswitch
Updated on 14-September-2018
References
- ↑ Breaker, Ronald R. (28 March, 2008). Complex Riboswitches. Science, 319(5871), 1795-1797. doi:10.1126/science.1152621
- ↑ Serganov A, Yuan YR, Pikovskaya O, Polonskaia A, Malinina L, Phan AT, Hobartner C, Micura R, Breaker RR, Patel DJ. Structural basis for discriminative regulation of gene expression by adenine- and guanine-sensing mRNAs. Chem Biol. 2004 Dec;11(12):1729-41. PMID:15610857 doi:S1074-5521(04)00343-6
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