This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
2vgj
From Proteopedia
(Difference between revisions)
| Line 1: | Line 1: | ||
| - | == | + | |
| + | ==Crystal structure of Actinomadura R39 DD-peptidase complexed with a peptidoglycan-mimetic cephalosporin== | ||
<StructureSection load='2vgj' size='340' side='right' caption='[[2vgj]], [[Resolution|resolution]] 2.40Å' scene=''> | <StructureSection load='2vgj' size='340' side='right' caption='[[2vgj]], [[Resolution|resolution]] 2.40Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
| Line 6: | Line 7: | ||
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1w79|1w79]], [[1w8q|1w8q]], [[1w8y|1w8y]], [[2vgk|2vgk]]</td></tr> | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1w79|1w79]], [[1w8q|1w8q]], [[1w8y|1w8y]], [[2vgk|2vgk]]</td></tr> | ||
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Serine-type_D-Ala-D-Ala_carboxypeptidase Serine-type D-Ala-D-Ala carboxypeptidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.16.4 3.4.16.4] </span></td></tr> | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Serine-type_D-Ala-D-Ala_carboxypeptidase Serine-type D-Ala-D-Ala carboxypeptidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.16.4 3.4.16.4] </span></td></tr> | ||
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vgj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vgj OCA], [http://pdbe.org/2vgj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2vgj RCSB], [http://www.ebi.ac.uk/pdbsum/2vgj PDBsum]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vgj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vgj OCA], [http://pdbe.org/2vgj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2vgj RCSB], [http://www.ebi.ac.uk/pdbsum/2vgj PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2vgj ProSAT]</span></td></tr> |
</table> | </table> | ||
== Function == | == Function == | ||
| Line 14: | Line 15: | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
| - | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vg/2vgj_consurf.spt"</scriptWhenChecked> | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vg/2vgj_consurf.spt"</scriptWhenChecked> |
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
| Line 31: | Line 32: | ||
==See Also== | ==See Also== | ||
| - | *[[ | + | *[[Carboxypeptidase|Carboxypeptidase]] |
== References == | == References == | ||
<references/> | <references/> | ||
| Line 40: | Line 41: | ||
[[Category: Charlier, P]] | [[Category: Charlier, P]] | ||
[[Category: Herman, R]] | [[Category: Herman, R]] | ||
| - | [[Category: Kerff, F]] | ||
[[Category: Sauvage, E]] | [[Category: Sauvage, E]] | ||
| + | [[Category: Kerff, F]] | ||
[[Category: Actinomadura]] | [[Category: Actinomadura]] | ||
[[Category: Antibiotic resistance]] | [[Category: Antibiotic resistance]] | ||
Revision as of 20:35, 19 September 2018
Crystal structure of Actinomadura R39 DD-peptidase complexed with a peptidoglycan-mimetic cephalosporin
| |||||||||||
Categories: Actinomadura sp | Serine-type D-Ala-D-Ala carboxypeptidase | Charlier, P | Herman, R | Sauvage, E | Kerff, F | Actinomadura | Antibiotic resistance | Carboxypeptidase | Cell shape | Cell wall biogenesis/degradation | Hydrolase | Penicillin-binding | Peptidoglycan | Peptidoglycan synthesis | Protease | Secreted | Transpeptidase

