Ubiquitin protein ligase

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Line 117: Line 117:
**[[2y1n]] – hUPL residues 47-435 + ZAP peptide <br />
**[[2y1n]] – hUPL residues 47-435 + ZAP peptide <br />
**[[5o76]] – hUPL residues 47-435 (mutant) + ZAP peptide <br />
**[[5o76]] – hUPL residues 47-435 (mutant) + ZAP peptide <br />
-
**[[4a4b]], [[4a4c]] – hUPL TKB domain (mutant) + ZAP peptide + ubiquitin conjugating enzyme E2 <br />
 
-
**[[1c4z]] – hUPL catalytic domain + ubiquitin conjugating enzyme E2 <br />
 
**[[4a49]] – hUPL RING domain + ubiquitin conjugating enzyme E2 <br />
**[[4a49]] – hUPL RING domain + ubiquitin conjugating enzyme E2 <br />
**[[5axi]] – mUPL-B TKB domain + cblin <br />
**[[5axi]] – mUPL-B TKB domain + cblin <br />
Line 161: Line 159:
**[[3bum]], [[3bun]], [[3buo]], [[3buw]], [[3bux]], [[3ob1]], [[3ob2]], [[3rlf]], [[3pfv]] – hUPL TKB domain + peptide <br />
**[[3bum]], [[3bun]], [[3buo]], [[3buw]], [[3bux]], [[3ob1]], [[3ob2]], [[3rlf]], [[3pfv]] – hUPL TKB domain + peptide <br />
**[[2y1n]] – hUPL residues 47-435 + ZAP peptide <br />
**[[2y1n]] – hUPL residues 47-435 + ZAP peptide <br />
-
**[[4a4b]], [[4a4c]] – hUPL TKB domain (mutant) + ZAP peptide + ubiquitin conjugating enzyme E2 <br />
+
**[[4a4b]], [[4a4c]] – hUPL TKB domain (mutant) + ZAP peptide + ubiquitin conjugating enzyme E2 D2<br />
**[[1c4z]] – hUPL catalytic domain + ubiquitin conjugating enzyme E2 <br />
**[[1c4z]] – hUPL catalytic domain + ubiquitin conjugating enzyme E2 <br />
-
**[[4a49]] – hUPL residues 354-435 + ubiquitin conjugating enzyme E2 <br />
+
**[[4a49]] – hUPL residues 354-435 + ubiquitin conjugating enzyme E2 D2 <br />
*'''Ubiquitin protein ligase EDD1'''
*'''Ubiquitin protein ligase EDD1'''
Line 235: Line 233:
**[[4wz2]], [[4xi1]], [[4wz0]] – LpUPL (mutant) – ''Legionella pneumophila'' <br />
**[[4wz2]], [[4xi1]], [[4wz0]] – LpUPL (mutant) – ''Legionella pneumophila'' <br />
-
**[[4wz3]] – LpUPL + E2<br />
+
**[[4wz3]] – LpUPL + E2 D2<br />
*'''Ubiquitin protein ligase MDM2''' see [[MDM2]]
*'''Ubiquitin protein ligase MDM2''' see [[MDM2]]
Line 368: Line 366:
**[[4r8p]] – hUPL + polycomb complex protein BMI-1 + histones + DNA <br />
**[[4r8p]] – hUPL + polycomb complex protein BMI-1 + histones + DNA <br />
-
*'''Ubiquitin protein ligase RNF''' Domains: PUB 1-184; catalytic 853-1072;
+
*'''Ubiquitin protein ligase RNF or ring finger protein''' Domains: PUB 1-184; catalytic 853-1072;
**[[4ppe]], [[3ng2]] – hUPL 4 RING domain <br />
**[[4ppe]], [[3ng2]] – hUPL 4 RING domain <br />
-
**[[4ap4]], [[5ait]], [[5aiu]] – hUPL 4 RING domain + E2 + ubiquitin<br />
+
**[[4ap4]], [[5ait]], [[5aiu]] – hUPL 4 RING domain + E2 N + ubiquitin<br />
**[[2pie]] – hUPL 8 FHA domain <br />
**[[2pie]] – hUPL 8 FHA domain <br />
**[[2csw]] – hUPL 8 FHA domain - NMR <br />
**[[2csw]] – hUPL 8 FHA domain - NMR <br />
**[[4ayc]], [[4gb0]] – hUPL 8 RING domain <br />
**[[4ayc]], [[4gb0]] – hUPL 8 RING domain <br />
-
**[[4orh]] – hUPL 8 residues 345-485 + E2 <br />
+
**[[4orh]] – hUPL 8 residues 345-485 + E2 N <br />
-
**[[4whv]] – hUPL 8 residues 345-485 + ubiquitin + E2 <br />
+
**[[4whv]] – hUPL 8 residues 345-485 + ubiquitin + E2 N <br />
-
**[[5d1k]], [[5d1l]], [[5d1m]] – hUPL 25 residues 126-258 + E2 <br />
+
**[[5d1k]], [[5d1l]], [[5d1m]] – hUPL 25 residues 126-258 + E2 D2 <br />
**[[4juy]], [[4oyj]], [[4p09]] – hUPL 31 PUB domain <br />
**[[4juy]], [[4oyj]], [[4p09]] – hUPL 31 PUB domain <br />
**[[4ljq]] – hUPL 31 catalytic domain <br />
**[[4ljq]] – hUPL 31 catalytic domain <br />
Line 399: Line 397:
**[[2rsf]] – mUPL 146 WWE domain + ATP<br />
**[[2rsf]] – mUPL 146 WWE domain + ATP<br />
**[[4qpl]] – mUPL 146 RING+WWE domains + E2<br />
**[[4qpl]] – mUPL 146 RING+WWE domains + E2<br />
 +
**[[5d0i]] – hUPL 165 residues 255-348 <br />
 +
**[[5d0k]], [[5d0m]], [[5ulh]], [[5ulk]] – hUPL 165 residues 255-348 + ubiquitin + E2 D2 <br />
**[[3l11]], [[4gb0]] – hUPL 168 RING domain <br />
**[[3l11]], [[4gb0]] – hUPL 168 RING domain <br />
**[[5xis]] – hUPL 168 residues 110-188 + diubiquitin <br />
**[[5xis]] – hUPL 168 residues 110-188 + diubiquitin <br />

Revision as of 19:22, 4 October 2018

Human UPL HOIP (magenta) complex with ubiquitin (green), imidazole and Zn+2 ion (grey) 4ljo

Drag the structure with the mouse to rotate

3D Structures of ubiquitin protein ligase

Updated on 04-October-2018

References

  1. ↑ Ardley HC, Robinson PA. E3 ubiquitin ligases. Essays Biochem. 2005;41:15-30. PMID:16250895 doi:http://dx.doi.org/10.1042/EB0410015
  2. ↑ Sakemi R, Yano H, Ogasawara S, Akiba J, Nakashima O, Fukahori S, Sata M, Kojiro M. X-linked inhibitor of apoptosis (XIAP) and XIAP-associated factor-1 expressions and their relationship to apoptosis in human hepatocellular carcinoma and non-cancerous liver tissues. Oncol Rep. 2007 Jul;18(1):65-70. PMID:17549347
  3. ↑ Aguilar C, Lenoir C, Lambert N, Begue B, Brousse N, Canioni D, Berrebi D, Roy M, Gerart S, Chapel H, Schwerd T, Siproudhis L, Schappi M, Al-Ahmari A, Mori M, Yamaide A, Galicier L, Neven B, Routes J, Uhlig HH, Koletzko S, Patel S, Kanegane H, Picard C, Fischer A, Bensussan NC, Ruemmele F, Hugot JP, Latour S. Characterization of Crohn disease in X-linked inhibitor of apoptosis-deficient male patients and female symptomatic carriers. J Allergy Clin Immunol. 2014 Nov;134(5):1131-41.e9. doi:, 10.1016/j.jaci.2014.04.031. Epub 2014 Jun 15. PMID:24942515 doi:http://dx.doi.org/10.1016/j.jaci.2014.04.031
  4. ↑ Ardley HC, Robinson PA. The role of ubiquitin-protein ligases in neurodegenerative disease. Neurodegener Dis. 2004;1(2-3):71-87. PMID:16908979 doi:http://dx.doi.org/10.1159/000080048
  5. ↑ Xu G, Jiang X, Jaffrey SR. A mental retardation-linked nonsense mutation in cereblon is rescued by proteasome inhibition. J Biol Chem. 2013 Oct 11;288(41):29573-85. doi: 10.1074/jbc.M113.472092. Epub, 2013 Aug 27. PMID:23983124 doi:http://dx.doi.org/10.1074/jbc.M113.472092
  6. ↑ Lu G, Middleton RE, Sun H, Naniong M, Ott CJ, Mitsiades CS, Wong KK, Bradner JE, Kaelin WG Jr. The myeloma drug lenalidomide promotes the cereblon-dependent destruction of Ikaros proteins. Science. 2014 Jan 17;343(6168):305-9. doi: 10.1126/science.1244917. Epub 2013 Nov, 29. PMID:24292623 doi:http://dx.doi.org/10.1126/science.1244917
  7. ↑ Stieglitz B, Rana RR, Koliopoulos MG, Morris-Davies AC, Schaeffer V, Christodoulou E, Howell S, Brown NR, Dikic I, Rittinger K. Structural basis for ligase-specific conjugation of linear ubiquitin chains by HOIP. Nature. 2013 Oct 20. doi: 10.1038/nature12638. PMID:24141947 doi:http://dx.doi.org/10.1038/nature12638
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