This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3dvs

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
 +
==Proteinase K by LB nanotmplate method after the second step of high dose on ESRF ID14-2 beamline==
==Proteinase K by LB nanotmplate method after the second step of high dose on ESRF ID14-2 beamline==
<StructureSection load='3dvs' size='340' side='right' caption='[[3dvs]], [[Resolution|resolution]] 1.02&Aring;' scene=''>
<StructureSection load='3dvs' size='340' side='right' caption='[[3dvs]], [[Resolution|resolution]] 1.02&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3dvs]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Engyodontium_album Engyodontium album]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DVS OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3DVS FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3dvs]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Tritirachium_album Tritirachium album]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DVS OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3DVS FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1ptk|1ptk]], [[3dvq|3dvq]], [[3dvr|3dvr]], [[3dw1|3dw1]], [[3dw3|3dw3]]</td></tr>
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1ptk|1ptk]], [[3dvq|3dvq]], [[3dvr|3dvr]], [[3dw1|3dw1]], [[3dw3|3dw3]]</td></tr>
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Peptidase_K Peptidase K], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.21.64 3.4.21.64] </span></td></tr>
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Peptidase_K Peptidase K], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.21.64 3.4.21.64] </span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3dvs FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dvs OCA], [http://pdbe.org/3dvs PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3dvs RCSB], [http://www.ebi.ac.uk/pdbsum/3dvs PDBsum]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3dvs FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dvs OCA], [http://pdbe.org/3dvs PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3dvs RCSB], [http://www.ebi.ac.uk/pdbsum/3dvs PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3dvs ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
Line 14: Line 15:
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dv/3dvs_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dv/3dvs_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
Line 25: Line 26:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Engyodontium album]]
 
[[Category: Peptidase K]]
[[Category: Peptidase K]]
 +
[[Category: Tritirachium album]]
[[Category: Nicolini, C]]
[[Category: Nicolini, C]]
[[Category: Pechkova, E]]
[[Category: Pechkova, E]]
[[Category: Tripathi, S K]]
[[Category: Tripathi, S K]]
[[Category: Alpha and beta protein]]
[[Category: Alpha and beta protein]]
 +
[[Category: Calcium]]
[[Category: Hydrolase]]
[[Category: Hydrolase]]
[[Category: Metal-binding]]
[[Category: Metal-binding]]

Revision as of 09:33, 14 November 2018

Proteinase K by LB nanotmplate method after the second step of high dose on ESRF ID14-2 beamline

3dvs, resolution 1.02Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools