This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
3e5n
From Proteopedia
(Difference between revisions)
| Line 1: | Line 1: | ||
| + | |||
==Crystal strucutre of D-alanine-D-alanine ligase from Xanthomonas oryzae pv. oryzae KACC10331== | ==Crystal strucutre of D-alanine-D-alanine ligase from Xanthomonas oryzae pv. oryzae KACC10331== | ||
<StructureSection load='3e5n' size='340' side='right' caption='[[3e5n]], [[Resolution|resolution]] 2.00Å' scene=''> | <StructureSection load='3e5n' size='340' side='right' caption='[[3e5n]], [[Resolution|resolution]] 2.00Å' scene=''> | ||
| Line 4: | Line 5: | ||
<table><tr><td colspan='2'>[[3e5n]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Xanom Xanom]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3E5N OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3E5N FirstGlance]. <br> | <table><tr><td colspan='2'>[[3e5n]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Xanom Xanom]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3E5N OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3E5N FirstGlance]. <br> | ||
</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">XOO0324 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=342109 XANOM])</td></tr> | </td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">XOO0324 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=342109 XANOM])</td></tr> | ||
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3e5n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3e5n OCA], [http://pdbe.org/3e5n PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3e5n RCSB], [http://www.ebi.ac.uk/pdbsum/3e5n PDBsum]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3e5n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3e5n OCA], [http://pdbe.org/3e5n PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3e5n RCSB], [http://www.ebi.ac.uk/pdbsum/3e5n PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3e5n ProSAT]</span></td></tr> |
</table> | </table> | ||
== Function == | == Function == | ||
| Line 12: | Line 13: | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
| - | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/e5/3e5n_consurf.spt"</scriptWhenChecked> | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/e5/3e5n_consurf.spt"</scriptWhenChecked> |
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
| Line 35: | Line 36: | ||
[[Category: Cell shape]] | [[Category: Cell shape]] | ||
[[Category: Cell wall biogenesis/degradation]] | [[Category: Cell wall biogenesis/degradation]] | ||
| + | [[Category: Cytoplasm]] | ||
[[Category: D-alanine-d-alanine ligase]] | [[Category: D-alanine-d-alanine ligase]] | ||
[[Category: Ligase]] | [[Category: Ligase]] | ||
Revision as of 22:11, 2 December 2018
Crystal strucutre of D-alanine-D-alanine ligase from Xanthomonas oryzae pv. oryzae KACC10331
| |||||||||||
Categories: Xanom | Ahn, Y J | Doan, T N.T | Kang, L W | Kim, H S | Kim, J G | Kim, J K | Lee, B M | Atp-binding | Bacterial blight | Cell shape | Cell wall biogenesis/degradation | Cytoplasm | D-alanine-d-alanine ligase | Ligase | Magnesium | Manganese | Metal-binding | Nucleotide-binding | Peptidoglycan synthesis
