Sandbox Reserved 1461
From Proteopedia
(Difference between revisions)
Line 19: | Line 19: | ||
== Structural highlights == | == Structural highlights == | ||
- | This structure is a quaternary structure and the primary <scene name='79/799589/Secondary_structures/1'>Secondary Structures</scene> in VesB is beta sheets. In the molecule it has an alpha helix and some random coils spread around in the structure. VesB is made up of two different domains, it can be shown in this <scene name='79/799589/Vesb_spacefill/6'>spacefill</scene> view. VesB has has two <scene name='79/799596/Disulfide_bonds/1'>disulfide bonds</scene> in it domains. The two different type of domains are the N-terminal and C-terminal domain. This molecule is <scene name='79/799589/Hydrophobic_and_polar/1'>Hydrophobic</scene> and does not react well with water. The hydrophobic are important because they | + | This structure is a quaternary structure and the primary <scene name='79/799589/Secondary_structures/1'>Secondary Structures</scene> in VesB is beta sheets. In the molecule it has an alpha helix and some random coils spread around in the structure. VesB is made up of two different domains, it can be shown in this <scene name='79/799589/Vesb_spacefill/6'>spacefill</scene> view. VesB has has two <scene name='79/799596/Disulfide_bonds/1'>disulfide bonds</scene> in it domains. The two different type of domains are the N-terminal and C-terminal domain. This molecule is <scene name='79/799589/Hydrophobic_and_polar/1'>Hydrophobic</scene> and does not react well with water. The hydrophobic are important because they show the area where the active site is located. Being hydrophilic shows that it does mix well with water. They are both shown throughout the molecule. The <scene name='79/799589/Active_site/3'>Active Site</scene> of the molecule is made up of 3 amino acids. The amino acids are Asp125-His78-Ser221 which are highlighted in red, magenta, and pink. It has a hydrophobic pocket that is made up of Val159, Val180, Ile164 and has a cleavage site made up of two amino acids Arg32, Ile33. |
== Kinetic Data == | == Kinetic Data == | ||
- | VesB activity was measured with different concentrations of Boc-Gln-Ala-Arg-7-amino-4-AMC in 5 mM HEPES, pH 7.5, at 37 °C. B, purified VesB (0.08 g/ml) was incubated with 50M leupeptin, 1 mM benzamidine, or 10 mM EDTA for 10 min at 37 °C. The Boc-Gln-AlaArg-7-amino-4-AMC (0.05 mM final concentration) was added and VesB activity was measured. When Boc-Gln-AlaArg-7-amino-4-AMC increases so does the pmol/min. <ref>https://s3.us-east-1.amazonaws.com/learn-us-east-1-prod-fleet01-xythos/5b158bd279e57/488299?response-content-disposition=inline%3B%20filename%2A%3DUTF-8%27%27J.%2520Biol.%2520Chem.-2014-Gadwal-8288-98%2520Vibrio%2520cholerae%2520serine%2520protease.pdf&response-content-type=application%2Fpdf&X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Date=20181116T020506Z&X-Amz-SignedHeaders=host&X-Amz-Expires=21600&X-Amz-Credential=AKIAIBGJ7RCS23L3LEJQ%2F20181116%2Fus-east-1%2Fs3%2Faws4_request&X-Amz-Signature=9e1220b65465ef522a3848949b1858eade9275dd28253481cb14469e6915e30c</ref> | + | VesB activity was measured with different concentrations of Boc-Gln-Ala-Arg-7-amino-4-AMC in 5 mM HEPES, pH 7.5, at 37 °C. B, purified VesB (0.08 g/ml) was incubated with 50M leupeptin, 1 mM benzamidine, or 10 mM EDTA for 10 min at 37 °C. The Boc-Gln-AlaArg-7-amino-4-AMC (0.05 mM final concentration) was added and VesB activity was measured. When Boc-Gln-AlaArg-7-amino-4-AMC increases so does the pmol/min. <ref>https://s3.us-east-1.amazonaws.com/learn-us-east-1-prod-fleet01-xythos/5b158bd279e57/488299?response-content-disposition=inline%3B%20filename%2A%3DUTF-8%27%27J.%2520Biol.%2520Chem.-2014-Gadwal-8288-98%2520Vibrio%2520cholerae%2520serine%2520protease.pdf&response-content-type=application%2Fpdf&X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Date=20181116T020506Z&X-Amz-SignedHeaders=host&X-Amz-Expires=21600&X-Amz-Credential=AKIAIBGJ7RCS23L3LEJQ%2F20181116%2Fus-east-1%2Fs3%2Faws4_request&X-Amz-Signature=9e1220b65465ef522a3848949b1858eade9275dd28253481cb14469e6915e30c</ref><ref> https://www.ebi.ac.uk/interpro/potm/2005_9/Page1.htm</ref><ref>http://www.jbc.org/content/286/19/16555</ref><ref>http://www.jbc.org/content/289/12/8288</ref> |
</StructureSection> | </StructureSection> | ||
== References == | == References == | ||
<references/> | <references/> |
Revision as of 17:04, 3 December 2018
This Sandbox is Reserved from October 22, 2018 through April 30, 2019 for use in the course Biochemistry taught by Bonnie Hall at the Grand View University, Des Moines, IA USA. This reservation includes Sandbox Reserved 1456 through Sandbox Reserved 1470. |
To get started:
More help: Help:Editing |
Structure of Vibrio cholerae protease B, VesB
|
References
- ↑ https://s3.us-east-1.amazonaws.com/learn-us-east-1-prod-fleet01-xythos/5b158bd279e57/488299?response-content-disposition=inline%3B%20filename%2A%3DUTF-8%27%27J.%2520Biol.%2520Chem.-2014-Gadwal-8288-98%2520Vibrio%2520cholerae%2520serine%2520protease.pdf&response-content-type=application%2Fpdf&X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Date=20181116T020506Z&X-Amz-SignedHeaders=host&X-Amz-Expires=21600&X-Amz-Credential=AKIAIBGJ7RCS23L3LEJQ%2F20181116%2Fus-east-1%2Fs3%2Faws4_request&X-Amz-Signature=9e1220b65465ef522a3848949b1858eade9275dd28253481cb14469e6915e30c
- ↑ https://www.ebi.ac.uk/interpro/potm/2005_9/Page1.htm
- ↑ http://www.jbc.org/content/286/19/16555
- ↑ http://www.jbc.org/content/289/12/8288