This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3ka7

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:05, 26 December 2018) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
-
{{STRUCTURE_3ka7| PDB=3ka7 | SCENE= }}
 
-
===Crystal Structure of an oxidoreductase from Methanosarcina mazei. Northeast Structural Genomics Consortium target id MaR208===
 
-
==About this Structure==
+
==Crystal Structure of an oxidoreductase from Methanosarcina mazei. Northeast Structural Genomics Consortium target id MaR208==
-
[[3ka7]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Methanosarcina_mazei Methanosarcina mazei]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KA7 OCA].
+
<StructureSection load='3ka7' size='340' side='right' caption='[[3ka7]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
-
[[Category: Methanosarcina mazei]]
+
== Structural highlights ==
-
[[Category: Acton, T B.]]
+
<table><tr><td colspan='2'>[[3ka7]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Dsm_2053 Dsm 2053]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KA7 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3KA7 FirstGlance]. <br>
-
[[Category: Baran, M C.]]
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene></td></tr>
-
[[Category: Cunningham, K.]]
+
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
[[Category: Hunt, J F.]]
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">MM_2493 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2209 DSM 2053])</td></tr>
-
[[Category: Janjua, H.]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ka7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ka7 OCA], [http://pdbe.org/3ka7 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3ka7 RCSB], [http://www.ebi.ac.uk/pdbsum/3ka7 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3ka7 ProSAT]</span></td></tr>
-
[[Category: Liu, J.]]
+
</table>
-
[[Category: Montelione, G T.]]
+
== Evolutionary Conservation ==
-
[[Category: NESG, Northeast Structural Genomics Consortium.]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: Owens, L.]]
+
Check<jmol>
-
[[Category: Rost, B.]]
+
<jmolCheckbox>
-
[[Category: Seetharaman, J.]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ka/3ka7_consurf.spt"</scriptWhenChecked>
-
[[Category: Su, M.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Tong, L.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Wang, D.]]
+
</jmolCheckbox>
-
[[Category: Xiao, R.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3ka7 ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Dsm 2053]]
 +
[[Category: Acton, T B]]
 +
[[Category: Baran, M C]]
 +
[[Category: Cunningham, K]]
 +
[[Category: Hunt, J F]]
 +
[[Category: Janjua, H]]
 +
[[Category: Liu, J]]
 +
[[Category: Montelione, G T]]
 +
[[Category: Structural genomic]]
 +
[[Category: Owens, L]]
 +
[[Category: Rost, B]]
 +
[[Category: Seetharaman, J]]
 +
[[Category: Su, M]]
 +
[[Category: Tong, L]]
 +
[[Category: Wang, D]]
 +
[[Category: Xiao, R]]
[[Category: Nesg]]
[[Category: Nesg]]
-
[[Category: Northeast structural genomics consortium]]
 
[[Category: Oxidoreductase]]
[[Category: Oxidoreductase]]
-
[[Category: Protein structure initiative]]
+
[[Category: PSI, Protein structure initiative]]
-
[[Category: Psi-2]]
+
-
[[Category: Structural genomic]]
+

Current revision

Crystal Structure of an oxidoreductase from Methanosarcina mazei. Northeast Structural Genomics Consortium target id MaR208

3ka7, resolution 1.80Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3ka7"
Personal tools