This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3l8d

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:03, 2 January 2019) (edit) (undo)
 
(5 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3l8d.jpg|left|200px]]
 
-
<!--
+
==Crystal structure of methyltransferase from Bacillus Thuringiensis==
-
The line below this paragraph, containing "STRUCTURE_3l8d", creates the "Structure Box" on the page.
+
<StructureSection load='3l8d' size='340' side='right' caption='[[3l8d]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3l8d]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacah Bacah]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L8D OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3L8D FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=K:POTASSIUM+ION'>K</scene></td></tr>
-
-->
+
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
{{STRUCTURE_3l8d| PDB=3l8d | SCENE= }}
+
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3l6z|3l6z]]</td></tr>
-
 
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">BALH_1870 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=412694 BACAH])</td></tr>
-
===Crystal structure of methyltransferase from Bacillus Thuringiensis===
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3l8d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3l8d OCA], [http://pdbe.org/3l8d PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3l8d RCSB], [http://www.ebi.ac.uk/pdbsum/3l8d PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3l8d ProSAT]</span></td></tr>
-
 
+
</table>
-
 
+
== Evolutionary Conservation ==
-
==About this Structure==
+
[[Image:Consurf_key_small.gif|200px|right]]
-
3L8D is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Bacillus_thuringiensis Bacillus thuringiensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L8D OCA].
+
Check<jmol>
-
[[Category: Bacillus thuringiensis]]
+
<jmolCheckbox>
-
[[Category: Almo, S C.]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/l8/3l8d_consurf.spt"</scriptWhenChecked>
-
[[Category: Burley, S K.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Fedorov, A A.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Fedorov, E V.]]
+
</jmolCheckbox>
-
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3l8d ConSurf].
-
[[Category: Sauder, M J.]]
+
<div style="clear:both"></div>
-
[[Category: Toro, R.]]
+
__TOC__
 +
</StructureSection>
 +
[[Category: Bacah]]
 +
[[Category: Almo, S C]]
 +
[[Category: Burley, S K]]
 +
[[Category: Fedorov, A A]]
 +
[[Category: Fedorov, E V]]
 +
[[Category: Structural genomic]]
 +
[[Category: Sauder, J M]]
 +
[[Category: Toro, R]]
[[Category: Methyltransferase]]
[[Category: Methyltransferase]]
-
[[Category: New york sgx research center for structural genomic]]
 
[[Category: Nysgrc]]
[[Category: Nysgrc]]
-
[[Category: Nysgxrc]]
+
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]
-
[[Category: Protein structure initiative]]
+
[[Category: PSI, Protein structure initiative]]
-
[[Category: Psi]]
+
-
[[Category: Structural genomic]]
+
[[Category: Transferase]]
[[Category: Transferase]]
- 
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan 13 14:46:05 2010''
 

Current revision

Crystal structure of methyltransferase from Bacillus Thuringiensis

3l8d, resolution 1.70Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools