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3l8m

From Proteopedia

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{{Seed}}
 
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[[Image:3l8m.jpg|left|200px]]
 
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==Crystal Structure of a probable thiamine pyrophosphokinase from Staphylococcus saprophyticus subsp. saprophyticus. Northeast Structural Genomics Consortium target id SyR86==
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The line below this paragraph, containing "STRUCTURE_3l8m", creates the "Structure Box" on the page.
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<StructureSection load='3l8m' size='340' side='right' caption='[[3l8m]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[3l8m]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Stas1 Stas1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L8M OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3L8M FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
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<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
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{{STRUCTURE_3l8m| PDB=3l8m | SCENE= }}
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">SSP1549 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=342451 STAS1])</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3l8m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3l8m OCA], [http://pdbe.org/3l8m PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3l8m RCSB], [http://www.ebi.ac.uk/pdbsum/3l8m PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3l8m ProSAT]</span></td></tr>
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===Crystal Structure of a probable thiamine pyrophosphokinase from Staphylococcus saprophyticus subsp. saprophyticus. Northeast Structural Genomics Consortium target id SyR86===
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</table>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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==About this Structure==
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Check<jmol>
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3L8M is a 2 chains structure with sequences from [http://en.wikipedia.org/wiki/Staphylococcus_saprophyticus Staphylococcus saprophyticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L8M OCA].
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<jmolCheckbox>
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[[Category: Staphylococcus saprophyticus]]
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/l8/3l8m_consurf.spt"</scriptWhenChecked>
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[[Category: Acton, T B.]]
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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[[Category: Baran, M C.]]
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<text>to colour the structure by Evolutionary Conservation</text>
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[[Category: Cunningham, K.]]
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</jmolCheckbox>
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[[Category: Hunt, J F.]]
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3l8m ConSurf].
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[[Category: Janjua, H.]]
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<div style="clear:both"></div>
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[[Category: Lew, S.]]
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__TOC__
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[[Category: Liu, J.]]
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</StructureSection>
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[[Category: Montelione, G T.]]
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[[Category: Stas1]]
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[[Category: NESG, Northeast Structural Genomics Consortium.]]
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[[Category: Acton, T B]]
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[[Category: Owens, L.]]
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[[Category: Baran, M C]]
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[[Category: Seetharaman, J.]]
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[[Category: Cunningham, K]]
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[[Category: Tong, L.]]
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[[Category: Hunt, J F]]
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[[Category: Wang, D.]]
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[[Category: Janjua, H]]
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[[Category: Xiao, R.]]
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[[Category: Lew, S]]
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[[Category: Liu, J]]
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[[Category: Montelione, G T]]
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[[Category: Structural genomic]]
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[[Category: Owens, L]]
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[[Category: Seetharaman, J]]
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[[Category: Tong, L]]
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[[Category: Wang, D]]
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[[Category: Xiao, R]]
[[Category: Atp binding]]
[[Category: Atp binding]]
[[Category: Kinase]]
[[Category: Kinase]]
[[Category: Nesg]]
[[Category: Nesg]]
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[[Category: Northeast structural genomics consortium]]
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[[Category: PSI, Protein structure initiative]]
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[[Category: Protein structure initiative]]
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[[Category: Psi-2]]
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[[Category: Structural genomic]]
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[[Category: Thiamin diphosphate biosynthetic process]]
[[Category: Thiamin diphosphate biosynthetic process]]
[[Category: Transferase]]
[[Category: Transferase]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 10 18:01:20 2010''
 

Current revision

Crystal Structure of a probable thiamine pyrophosphokinase from Staphylococcus saprophyticus subsp. saprophyticus. Northeast Structural Genomics Consortium target id SyR86

3l8m, resolution 2.40Å

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