This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3laz

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:09, 2 January 2019) (edit) (undo)
 
(4 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3laz.jpg|left|200px]]
 
-
<!--
+
==The crystal structure of the N-terminal domain of D-galactarate dehydratase from Escherichia coli CFT073==
-
The line below this paragraph, containing "STRUCTURE_3laz", creates the "Structure Box" on the page.
+
<StructureSection load='3laz' size='340' side='right' caption='[[3laz]], [[Resolution|resolution]] 1.92&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3laz]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Ecol6 Ecol6]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LAZ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3LAZ FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
-->
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">c3883, yhaG ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=199310 ECOL6])</td></tr>
-
{{STRUCTURE_3laz| PDB=3laz | SCENE= }}
+
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Galactarate_dehydratase Galactarate dehydratase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.2.1.42 4.2.1.42] </span></td></tr>
-
 
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3laz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3laz OCA], [http://pdbe.org/3laz PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3laz RCSB], [http://www.ebi.ac.uk/pdbsum/3laz PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3laz ProSAT]</span></td></tr>
-
===The crystal structure of the N-terminal domain of D-galactarate dehydratase from Escherichia coli CFT073===
+
</table>
-
 
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
==About this Structure==
+
Check<jmol>
-
3LAZ is a 2 chains structure with sequences from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LAZ OCA].
+
<jmolCheckbox>
-
[[Category: Escherichia coli]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/la/3laz_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3laz ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Ecol6]]
[[Category: Galactarate dehydratase]]
[[Category: Galactarate dehydratase]]
-
[[Category: Bearden, J.]]
+
[[Category: Bearden, J]]
-
[[Category: Joachimiak, A.]]
+
[[Category: Joachimiak, A]]
-
[[Category: Li, H.]]
+
[[Category: Li, H]]
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
[[Category: Structural genomic]]
-
[[Category: Tan, K.]]
+
[[Category: Tan, K]]
 +
[[Category: Lyase]]
[[Category: Mcsg]]
[[Category: Mcsg]]
-
[[Category: Midwest center for structural genomic]]
+
[[Category: PSI, Protein structure initiative]]
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi-2]]
+
-
[[Category: Structural genomic]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan 20 16:12:34 2010''
+

Current revision

The crystal structure of the N-terminal domain of D-galactarate dehydratase from Escherichia coli CFT073

3laz, resolution 1.92Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3laz"
Personal tools