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3m5v
From Proteopedia
(Difference between revisions)
(New page: '''Unreleased structure''' The entry 3m5v is ON HOLD Authors: Kim, Y., Zhou, M., Kwon, K, Anderson, W.F., Joachimiak, A., CSGID Description: Crystal Structure of Dihydrodipicolinate Sy...) |
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| - | '''Unreleased structure''' | ||
| - | + | ==Crystal Structure of Dihydrodipicolinate Synthase from Campylobacter jejuni== | |
| + | <StructureSection load='3m5v' size='340' side='right' caption='[[3m5v]], [[Resolution|resolution]] 1.80Å' scene=''> | ||
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[3m5v]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/"campylobacter_fetus_subsp._jejuni"_smibert_1974 "campylobacter fetus subsp. jejuni" smibert 1974]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3M5V OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3M5V FirstGlance]. <br> | ||
| + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> | ||
| + | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | ||
| + | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3ler|3ler]]</td></tr> | ||
| + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Cj0806, dapA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=197 "Campylobacter fetus subsp. jejuni" Smibert 1974])</td></tr> | ||
| + | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/4-hydroxy-tetrahydrodipicolinate_synthase 4-hydroxy-tetrahydrodipicolinate synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.3.3.7 4.3.3.7] </span></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3m5v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3m5v OCA], [http://pdbe.org/3m5v PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3m5v RCSB], [http://www.ebi.ac.uk/pdbsum/3m5v PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3m5v ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | == Function == | ||
| + | [[http://www.uniprot.org/uniprot/DAPA_CAMJE DAPA_CAMJE]] Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).[HAMAP-Rule:MF_00418] | ||
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/m5/3m5v_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3m5v ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| - | + | ==See Also== | |
| - | + | *[[Dihydrodipicolinate synthase|Dihydrodipicolinate synthase]] | |
| - | + | __TOC__ | |
| - | + | </StructureSection> | |
| - | + | [[Category: Campylobacter fetus subsp. jejuni smibert 1974]] | |
| + | [[Category: 4-hydroxy-tetrahydrodipicolinate synthase]] | ||
| + | [[Category: Anderson, W F]] | ||
| + | [[Category: Structural genomic]] | ||
| + | [[Category: Joachimiak, A]] | ||
| + | [[Category: Kim, Y]] | ||
| + | [[Category: Kwon, K]] | ||
| + | [[Category: Zhou, M]] | ||
| + | [[Category: Amino-acid biosynthesis]] | ||
| + | [[Category: Csgid]] | ||
| + | [[Category: Diaminopimelate biosynthesis]] | ||
| + | [[Category: Lyase]] | ||
| + | [[Category: Lysine biosynthesis]] | ||
| + | [[Category: Schiff base]] | ||
| + | [[Category: Tim barrel]] | ||
Current revision
Crystal Structure of Dihydrodipicolinate Synthase from Campylobacter jejuni
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Categories: Campylobacter fetus subsp. jejuni smibert 1974 | 4-hydroxy-tetrahydrodipicolinate synthase | Anderson, W F | Structural genomic | Joachimiak, A | Kim, Y | Kwon, K | Zhou, M | Amino-acid biosynthesis | Csgid | Diaminopimelate biosynthesis | Lyase | Lysine biosynthesis | Schiff base | Tim barrel
